ATTED-II : GeneCoexpression result

Species	Gene	Description
bra-r.6	103838307	DNA-directed RNA polymerase IV subunit 1
bra-r.6	117132791	DNA-directed RNA polymerase IV subunit 1
bra-r.6	103847833	DNA-directed RNA polymerase IV subunit 1
bna-r.1	106406243	DNA-directed RNA polymerase IV subunit 1
bna-r.1	106346632	DNA-directed RNA polymerase IV subunit 1-like
bna-r.1	106420995	DNA-directed RNA polymerase IV subunit 1
ath-u.5	NRPD1A	nuclear RNA polymerase D1A
ghi-r.1	107926978	DNA-directed RNA polymerase IV subunit 1
ghi-r.1	107930048	DNA-directed RNA polymerase IV subunit 1
ghi-r.1	107904496	DNA-directed RNA polymerase IV subunit 1
cit-r.1	102607057	DNA-directed RNA polymerase IV subunit 1
gma-u.5	100810483	DNA-directed RNA polymerase IV subunit 1
gma-u.5	100796185	DNA-directed RNA polymerase IV subunit 1
vvi-u.5	100254724	DNA-directed RNA polymerase IV subunit 1
ppo-u.5	7490920	DNA-directed RNA polymerase IV subunit 1
mtr-u.5	11436803	DNA-directed RNA polymerase IV subunit 1
sly-u.5	778259	DNA-directed RNA polymerase IV subunit 1
sot-r.1	102603437	DNA-directed RNA polymerase IV subunit 1
nta-r.1	107794854	DNA-directed RNA polymerase IV subunit 1
nta-r.1	107766126	DNA-directed RNA polymerase IV subunit 1
osa-u.5	4336722	DNA-directed RNA polymerase IV subunit 1
osa-u.5	4347810	DNA-directed RNA polymerase IV subunit 1
zma-u.5	100501057	DNA dependent RNA polymerase D largest subunit
tae-r.2	123180590	DNA-directed RNA polymerase IV subunit 1
tae-r.2	123113199	DNA-directed RNA polymerase IV subunit 1
tae-r.2	123038976	DNA-directed RNA polymerase IV subunit 1
hvu-r.1	123426175	DNA-directed RNA polymerase IV subunit 1
sbi-r.1	8060411	DNA-directed RNA polymerase IV subunit 1
bdi-r.1	100842842	DNA-directed RNA polymerase IV subunit 1

Annotation

functional annotation

KEGG

brp03020 [list] [network] RNA polymerase (79 genes)

GO BP

GO:0006351 [list] [network] DNA-templated transcription

(335 genes)

IEA

GO CC

GO:0005665 [list] [network] RNA polymerase II, core complex

(41 genes)

IEA

GO MF

GO:0003677 [list] [network] DNA binding

(3159 genes)

IEA

Protein

XP_009112989.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9

(predict for XP_009112989.1)

Subcellular
localization
TargetP

other 8

(predict for XP_009112989.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bra-r.6 for 103838307	bra-r.6 for 117132791	bra-r.6 for 103847833	bna-r.1 for 106406243	bna-r.1 for 106346632	bna-r.1 for 106420995	ath-u.5 for NRPD1A	ghi-r.1 for 107926978	ghi-r.1 for 107930048	ghi-r.1 for 107904496	cit-r.1 for 102607057	gma-u.5 for 100810483	gma-u.5 for 100796185	vvi-u.5 for 100254724	ppo-u.5 for 7490920	mtr-u.5 for 11436803	sly-u.5 for 778259	sot-r.1 for 102603437	nta-r.1 for 107794854	nta-r.1 for 107766126	osa-u.5 for 4336722	osa-u.5 for 4347810	zma-u.5 for 100501057	tae-r.2 for 123180590	tae-r.2 for 123113199	tae-r.2 for 123038976	hvu-r.1 for 123426175	sbi-r.1 for 8060411	bdi-r.1 for 100842842

Ortholog

Ortholog ID: 7845

Species

bra

bna

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

NRPD1A

Function^*

DNA-directed RNA polymerase IV subunit 1

DNA-directed RNA polymerase IV subunit 1-like

DNA-directed RNA polymerase IV subunit 1

nuclear RNA polymerase D1A

DNA-directed RNA polymerase IV subunit 1

DNA dependent RNA polymerase D largest subunit

DNA-directed RNA polymerase IV subunit 1

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03020	RNA polymerase	3
bra04075	Plant hormone signal transduction	2
bra00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00620	Pyruvate metabolism	3
bra01200	Carbon metabolism	3
bra03020	RNA polymerase	3
bra00010	Glycolysis / Gluconeogenesis	2
bra00020	Citrate cycle (TCA cycle)	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03020	RNA polymerase	3
bra00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03020	RNA polymerase	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03020	RNA polymerase	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03020	RNA polymerase	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03020	RNA polymerase	3
ghi00100	Steroid biosynthesis	2
ghi03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03020	RNA polymerase	3
ghi00100	Steroid biosynthesis	2
ghi03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03020	RNA polymerase	3
ghi00100	Steroid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03020	RNA polymerase	3
gma03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03020	RNA polymerase	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04142	Lysosome	2
ppo03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04120	Ubiquitin mediated proteolysis	3
osa03013	Nucleocytoplasmic transport	3
osa03020	RNA polymerase	2
osa03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	5
tae03040	Spliceosome	4
tae03083	Polycomb repressive complex	3
tae03020	RNA polymerase	2
tae03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	2
tae03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	3
tae03015	mRNA surveillance pathway	3
tae03020	RNA polymerase	2
tae03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03440	Homologous recombination	2
bdi03013	Nucleocytoplasmic transport	2
bdi03460	Fanconi anemia pathway	2

Expression

Expression pattern

Entrez Gene ID^*

103838307

117132791

103847833

106406243

106346632

106420995

842605

107926978

107930048

107904496

102607057

100810483

100796185

100254724

7490920

11436803

778259

102603437

107794854

107766126

4336722

4347810

100501057

123180590

123113199

123038976

123426175

8060411

100842842

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 103838307 (bra-r.6 coexpression data)

Top 50 enrichment test to 103838307 (bra-r.6 coexpression data)


Species	bra	bna	ath	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	3	3	1	3	1	2	1	1	1	1	1	2	2	1	3	1	1	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 103838307 (bra-r.6 coexpression data)

Top 50 enrichment test to 103838307 (bra-r.6 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**