ATTED-II : GeneCoexpression result

Species	Gene	Description
sot-r.1	102603437	DNA-directed RNA polymerase IV subunit 1
sly-u.5	778259	DNA-directed RNA polymerase IV subunit 1
ath-u.5	NRPD1A	nuclear RNA polymerase D1A
gma-u.5	100796185	DNA-directed RNA polymerase IV subunit 1
gma-u.5	100810483	DNA-directed RNA polymerase IV subunit 1
vvi-u.5	100254724	DNA-directed RNA polymerase IV subunit 1
ppo-u.5	7490920	DNA-directed RNA polymerase IV subunit 1
mtr-u.5	11436803	DNA-directed RNA polymerase IV subunit 1
osa-u.5	4347810	DNA-directed RNA polymerase IV subunit 1
osa-u.5	4336722	DNA-directed RNA polymerase IV subunit 1
zma-u.5	100501057	DNA dependent RNA polymerase D largest subunit

functional annotation

KEGG

sot03020 [list] [network] RNA polymerase (55 genes)

GO BP

GO:0006351 [list] [network] DNA-templated transcription

(230 genes)

IEA

GO CC

GO MF

GO:0003899 [list] [network] DNA-directed RNA polymerase activity	(13 genes)	IEA
GO:0003677 [list] [network] DNA binding	(1885 genes)	IEA

Protein

XP_006358858.1 [sequence] [blastp]
XP_015169636.1 [sequence] [blastp]
XP_015169637.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, plas 2, E.R. 2, E.R._plas 2	(predict for XP_006358858.1)
nucl 4, plas 2, E.R. 2, E.R._plas 2	(predict for XP_015169636.1)
nucl 4, plas 2, E.R. 2, E.R._plas 2	(predict for XP_015169637.1)

Subcellular
localization
TargetP

other 8	(predict for XP_006358858.1)
other 8	(predict for XP_015169636.1)
other 8	(predict for XP_015169637.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sot-r.1 for 102603437	sly-u.5 for 778259	ath-u.5 for NRPD1A	gma-u.5 for 100796185	gma-u.5 for 100810483	vvi-u.5 for 100254724	ppo-u.5 for 7490920	mtr-u.5 for 11436803	osa-u.5 for 4347810	osa-u.5 for 4336722	zma-u.5 for 100501057

Ortholog ID: 7845

Species

sot

sly

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

Symbol

NRPD1A

Function^*

DNA-directed RNA polymerase IV subunit 1

nuclear RNA polymerase D1A

DNA-directed RNA polymerase IV subunit 1

DNA dependent RNA polymerase D largest subunit

DNA-directed RNA polymerase IV subunit 1

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03020	RNA polymerase	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03020	RNA polymerase	3
gma03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03020	RNA polymerase	3
bra04075	Plant hormone signal transduction	2
bra00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03020	RNA polymerase	3
bra00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04142	Lysosome	2
ppo03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03020	RNA polymerase	3
ghi00100	Steroid biosynthesis	2
ghi03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03020	RNA polymerase	3
ghi00100	Steroid biosynthesis	2
ghi03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03020	RNA polymerase	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03020	RNA polymerase	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04120	Ubiquitin mediated proteolysis	3
osa03013	Nucleocytoplasmic transport	3
osa03020	RNA polymerase	2
osa03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	3
tae03015	mRNA surveillance pathway	3
tae03020	RNA polymerase	2
tae03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	5
tae03040	Spliceosome	4
tae03083	Polycomb repressive complex	3
tae03020	RNA polymerase	2
tae03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03440	Homologous recombination	2
bdi03013	Nucleocytoplasmic transport	2
bdi03460	Fanconi anemia pathway	2

Expression

Expression pattern

Entrez Gene ID^*

102603437

778259

107766126

107794854

842605

100796185

100810483

103838307

103847833

100254724

7490920

11436803

107930048

107926978

106420995

106406243

102607057

4336722

4347810

100501057

123038976

123180590

123426175

8060411

100842842

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 102603437 (sot-r.1 coexpression data)

Top 50 enrichment test to 102603437 (sot-r.1 coexpression data)


Species	sot	sly	ath	gma	vvi	ppo	mtr	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	nta	cre	tae
Paralog	1	1	1	2	1	1	1	2	1	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 102603437 (sot-r.1 coexpression data)

Top 50 enrichment test to 102603437 (sot-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**