ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
vvi-u.5	100262569	putative casein kinase II subunit beta-4
vvi-r.5	100262569	putative casein kinase II subunit beta-4
vvi-m.5	100262569	putative casein kinase II subunit beta-4
vvi-u.5	100266745	putative casein kinase II subunit beta-4
ath-u.5	CKB4	casein kinase II beta subunit 4
ath-u.5	CKB3	casein kinase II beta chain 3
ath-u.5	CKB2	casein kinase II beta chain 2
gma-u.5	100784848	putative casein kinase II subunit beta
gma-u.5	100784315	putative casein kinase II subunit beta
gma-u.5	100789357	putative casein kinase II subunit beta
bra-r.6	103830251	casein kinase II subunit beta-3
bra-r.6	103860926	casein kinase II subunit beta-2
bra-r.6	103858139	putative casein kinase II subunit beta-4
ppo-u.5	7483807	putative casein kinase II subunit beta-4
ppo-u.5	18096766	casein kinase II subunit beta-2
ppo-u.5	18096905	casein kinase II subunit beta-2
mtr-u.5	25493577	casein kinase II subunit beta-1
mtr-u.5	11430161	casein kinase II subunit beta-1
ghi-r.1	107919855	casein kinase II subunit beta-1
ghi-r.1	107923391	putative casein kinase II subunit beta-4
ghi-r.1	107924805	casein kinase II subunit beta-2
bna-r.1	125584339	putative casein kinase II subunit beta-4
bna-r.1	106413504	casein kinase II subunit beta-1
bna-r.1	106353123	casein kinase II subunit beta-3
cit-r.1	102618939	casein kinase II subunit beta-1
cit-r.1	102621387	casein kinase II subunit beta-1
sly-u.5	101245655	putative casein kinase II subunit beta-4
sly-u.5	101249856	putative casein kinase II subunit beta-4
sly-u.5	101257119	putative casein kinase II subunit beta-4
sot-r.1	102591581	putative casein kinase II subunit beta-4
sot-r.1	102594940	putative casein kinase II subunit beta-4
sot-r.1	102597719	putative casein kinase II subunit beta-4
nta-r.1	107815247	putative casein kinase II subunit beta-4
nta-r.1	107812461	putative casein kinase II subunit beta-4
nta-r.1	107770532	putative casein kinase II subunit beta-4
osa-u.5	4349414	putative casein kinase II subunit beta-4
osa-u.5	4343287	putative casein kinase II subunit beta-4
zma-u.5	541824	casein kinase II subunit beta-4
zma-u.5	100283448	casein kinase II subunit beta-4
zma-u.5	542628	uncharacterized LOC542628
tae-r.2	123054069	casein kinase II subunit beta-1
tae-r.2	123052124	putative casein kinase II subunit beta-4
tae-r.2	123046191	casein kinase II subunit beta-1
hvu-r.1	123439104	putative casein kinase II subunit beta-4
hvu-r.1	123450082	putative casein kinase II subunit beta-4
hvu-r.1	123427395	casein kinase II subunit beta-1-like
sbi-r.1	110436372	casein kinase II subunit beta-1-like
sbi-r.1	110432853	putative casein kinase II subunit beta-4
sbi-r.1	110431830	putative casein kinase II subunit beta-4
bdi-r.1	100839492	putative casein kinase II subunit beta-4
bdi-r.1	100821861	putative casein kinase II subunit beta-4
bdi-r.1	100827500	casein kinase II subunit beta-1
cre-r.1	CHLRE_01g016556v5	uncharacterized protein

Top 50 coexpressed genes to 100262569 (vvi-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100262569 (vvi-u.5 coexpression data)

CoexMap"100262569"

[Cytoscape]

Annotation

functional annotation

KEGG

vvi03008 [list] [network] Ribosome biogenesis in eukaryotes (287 genes)

vvi03083 [list] [network] Polycomb repressive complex (47 genes)

vvi04712 [list] [network] Circadian rhythm - plant (44 genes)

GO BP

GO CC

GO:0005956 [list] [network] protein kinase CK2 complex	(6 genes)	IEA
GO:0005737 [list] [network] cytoplasm	(4496 genes)	IEA

GO MF

GO:0019887 [list] [network] protein kinase regulator activity

(69 genes)

IEA

Protein

XP_010664237.1 [sequence] [blastp]
XP_059590058.1 [sequence] [blastp]
XP_059590062.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 5, cyto 2, pero 1, chlo 1, extr 1	(predict for XP_010664237.1)
nucl 5, cyto 2, pero 1, chlo 1, extr 1	(predict for XP_059590058.1)
nucl 4, cyto 2, cysk_nucl 2, nucl_plas 2	(predict for XP_059590062.1)

Subcellular
localization
TargetP

other 4, mito 4	(predict for XP_010664237.1)
other 4, mito 4	(predict for XP_059590058.1)
other 4, mito 4	(predict for XP_059590062.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	vvi-u.5 for 100262569	vvi-r.5 for 100262569	vvi-m.5 for 100262569	vvi-u.5 for 100266745	ath-u.5 for CKB4	ath-u.5 for CKB3	ath-u.5 for CKB2	gma-u.5 for 100784848	gma-u.5 for 100784315	gma-u.5 for 100789357	bra-r.6 for 103830251	bra-r.6 for 103860926	bra-r.6 for 103858139	ppo-u.5 for 7483807	ppo-u.5 for 18096766	ppo-u.5 for 18096905	mtr-u.5 for 25493577	mtr-u.5 for 11430161	ghi-r.1 for 107919855	ghi-r.1 for 107923391	ghi-r.1 for 107924805	bna-r.1 for 125584339	bna-r.1 for 106413504	bna-r.1 for 106353123	cit-r.1 for 102618939	cit-r.1 for 102621387	sly-u.5 for 101245655	sly-u.5 for 101249856	sly-u.5 for 101257119	sot-r.1 for 102591581	sot-r.1 for 102594940	sot-r.1 for 102597719	nta-r.1 for 107815247	nta-r.1 for 107812461	nta-r.1 for 107770532	osa-u.5 for 4349414	osa-u.5 for 4343287	zma-u.5 for 541824	zma-u.5 for 100283448	zma-u.5 for 542628	tae-r.2 for 123054069	tae-r.2 for 123052124	tae-r.2 for 123046191	hvu-r.1 for 123439104	hvu-r.1 for 123450082	hvu-r.1 for 123427395	sbi-r.1 for 110436372	sbi-r.1 for 110432853	sbi-r.1 for 110431830	bdi-r.1 for 100839492	bdi-r.1 for 100821861	bdi-r.1 for 100827500	cre-r.1 for CHLRE_01g016556v5

Ortholog

Ortholog ID: 877

Species

vvi

ath

gma

bra

ppo

mtr

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

LOC100262569

LOC100266745

CKB4

CKB3

CKB2

Function^*

putative casein kinase II subunit beta-4

casein kinase II beta subunit 4

casein kinase II beta chain 3

casein kinase II beta chain 2

putative casein kinase II subunit beta

casein kinase II subunit beta-2

casein kinase II subunit beta-3

casein kinase II subunit beta-2

putative casein kinase II subunit beta-4

casein kinase II subunit beta-1

casein kinase II subunit beta-2

casein kinase II subunit beta-3

casein kinase II subunit beta-2

casein kinase II subunit beta-1

putative casein kinase II subunit beta-4

casein kinase II subunit beta-3

putative casein kinase II subunit beta-4

casein kinase II subunit beta-3-like

putative casein kinase II subunit beta-4

casein kinase II subunit beta-3

casein kinase II subunit beta-1

putative casein kinase II subunit beta-4

casein kinase II subunit beta-4

CK2 regulatory subunit B1

casein kinase II subunit beta-1

putative casein kinase II subunit beta-4

casein kinase II subunit beta-1-like

putative casein kinase II subunit beta-4

casein kinase II subunit beta-1-like

putative casein kinase II subunit beta-4

casein kinase II subunit beta-1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	3
vvi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	2
ath03083	Polycomb repressive complex	2
ath04712	Circadian rhythm - plant	2
ath04144	Endocytosis	2
ath04517	IgSF CAM signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	4
ath04712	Circadian rhythm - plant	4
ath03083	Polycomb repressive complex	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04712	Circadian rhythm - plant	7
gma04016	MAPK signaling pathway - plant	2
gma04075	Plant hormone signal transduction	2
gma03018	RNA degradation	2
gma03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	2
gma03083	Polycomb repressive complex	2
gma04712	Circadian rhythm - plant	2
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03050	Proteasome	3
gma03083	Polycomb repressive complex	3
gma01200	Carbon metabolism	2
gma03008	Ribosome biogenesis in eukaryotes	2
gma04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03250	Viral life cycle - HIV-1	2
bra03008	Ribosome biogenesis in eukaryotes	2
bra04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04712	Circadian rhythm - plant	6
ppo04120	Ubiquitin mediated proteolysis	3
ppo04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04712	Circadian rhythm - plant	2
ppo04145	Phagosome	2
ppo04517	IgSF CAM signaling	2
ppo04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04144	Endocytosis	3
ppo04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03050	Proteasome	5
mtr03008	Ribosome biogenesis in eukaryotes	2
mtr03083	Polycomb repressive complex	2
mtr04712	Circadian rhythm - plant	2
mtr03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03050	Proteasome	8
mtr03008	Ribosome biogenesis in eukaryotes	2
mtr03083	Polycomb repressive complex	2
mtr04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	6
ghi03083	Polycomb repressive complex	6
ghi04712	Circadian rhythm - plant	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	8
ghi03083	Polycomb repressive complex	8
ghi04712	Circadian rhythm - plant	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	8
ghi03083	Polycomb repressive complex	8
ghi04712	Circadian rhythm - plant	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	4
bna03083	Polycomb repressive complex	4
bna04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	4
bna03083	Polycomb repressive complex	4
bna04712	Circadian rhythm - plant	4
bna00330	Arginine and proline metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	4
bna03083	Polycomb repressive complex	4
bna04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03083	Polycomb repressive complex	2
cit03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04712	Circadian rhythm - plant	4
cit03015	mRNA surveillance pathway	3
cit03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03015	mRNA surveillance pathway	3
sly03008	Ribosome biogenesis in eukaryotes	3
sly03083	Polycomb repressive complex	3
sly04712	Circadian rhythm - plant	3
sly03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	3
sly03083	Polycomb repressive complex	3
sly04712	Circadian rhythm - plant	3
sly03050	Proteasome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	3
sly04120	Ubiquitin mediated proteolysis	3
sly04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	3
sot03083	Polycomb repressive complex	3
sot04712	Circadian rhythm - plant	3
sot03018	RNA degradation	2
sot04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04141	Protein processing in endoplasmic reticulum	3
sot03008	Ribosome biogenesis in eukaryotes	3
sot03083	Polycomb repressive complex	3
sot04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03083	Polycomb repressive complex	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04626	Plant-pathogen interaction	6
nta03008	Ribosome biogenesis in eukaryotes	4
nta03083	Polycomb repressive complex	4
nta04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	2
nta03083	Polycomb repressive complex	2
nta04712	Circadian rhythm - plant	2
nta03040	Spliceosome	2
nta01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03050	Proteasome	8
nta03040	Spliceosome	4
nta03008	Ribosome biogenesis in eukaryotes	2
nta03083	Polycomb repressive complex	2
nta04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04712	Circadian rhythm - plant	3
osa03040	Spliceosome	2
osa03008	Ribosome biogenesis in eukaryotes	2
osa03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03420	Nucleotide excision repair	2
osa03008	Ribosome biogenesis in eukaryotes	2
osa03083	Polycomb repressive complex	2
osa04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04712	Circadian rhythm - plant	4
zma03008	Ribosome biogenesis in eukaryotes	3
zma03083	Polycomb repressive complex	3
zma03015	mRNA surveillance pathway	2
zma04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04712	Circadian rhythm - plant	6
zma03008	Ribosome biogenesis in eukaryotes	3
zma03083	Polycomb repressive complex	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04626	Plant-pathogen interaction	2
zma03250	Viral life cycle - HIV-1	2
zma03272	Virion - Hepatitis viruses	2
zma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03022	Basal transcription factors	6
tae04144	Endocytosis	3
tae03008	Ribosome biogenesis in eukaryotes	3
tae03083	Polycomb repressive complex	3
tae04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	3
tae03083	Polycomb repressive complex	3
tae04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	4
tae03083	Polycomb repressive complex	4
tae04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04712	Circadian rhythm - plant	2
hvu03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	2
hvu04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00020	Citrate cycle (TCA cycle)	2
sbi01200	Carbon metabolism	2
sbi01210	2-Oxocarboxylic acid metabolism	2
sbi04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04712	Circadian rhythm - plant	2
bdi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	5
cre03008	Ribosome biogenesis in eukaryotes	2
cre04712	Circadian rhythm - plant	2

Expression

Expression pattern

Entrez Gene ID^*

100262569

100266745

819076

825196

827484

100789357

100799304

100780095

103860926

103841878

18096766

18096905

18105101

25493577

11430161

107926305

107933739

107912198

106414855

106415652

106440228

102618939

102621387

101249856

101257119

101246833

102591581

102597719

102600211

107815247

107772947

107783425

4349414

4343287

541824

100283448

541823

123046191

123099180

123172147

123439104

123427395

123426079

110436372

110432853

110431830

100839492

100821861

100827500

5715130

The preparation time of this page was 0.2 [sec].


Species	vvi	ath	gma	bra	ppo	mtr	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	3	3	3	3	2	3	3	2	3	3	3	2	3	3	3	3	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100262569 (vvi-u.5 coexpression data)

Top 50 enrichment test to 100262569 (vvi-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**