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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5  100265489  pentatricopeptide repeat-containing protein At5g42450, mitochondrial 
 vvi-r.5  100265489  pentatricopeptide repeat-containing protein At5g42450, mitochondrial 
 vvi-m.5  100265489  pentatricopeptide repeat-containing protein At5g42450, mitochondrial 
 ath-u.5  AT5G42450  Pentatricopeptide repeat (PPR) superfamily protein 
 mtr-u.5  25488563  pentatricopeptide repeat-containing protein At5g42450, mitochondrial 
 sly-u.5  104649097  pentatricopeptide repeat-containing protein At5g42450, mitochondrial 
 zma-u.5  100285432  tetratricopeptide-like helical 

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Top 50 coexpressed genes to 100265489 (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100265489 (vvi-u.5 coexpression data)

CoexMap"100265489"


vviLOC100265489 | Entrez gene ID : 100265489
Species vvi ath mtr sly zma sbi nta bra osa cre cit hvu ppo bdi sot tae bna ghi gma
Paralog 3 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (500 genes)  IEA  
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (1286 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4232 genes)  IEA  
Protein XP_010653710.1 [sequence] [blastp]
XP_019076982.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  mito 4,  chlo_mito 4  (predict for XP_010653710.1)
chlo 4,  mito 4,  chlo_mito 4  (predict for XP_019076982.1)
Subcellular
localization
TargetP
mito 4,  other 4  (predict for XP_010653710.1)
mito 4,  other 4  (predict for XP_019076982.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID
Other ID Link Target Reference

vvi-u.5
for
100265489

.

vvi-r.5
for
100265489

.

vvi-m.5
for
100265489

.

ath-u.5
for
AT5G42450

.

mtr-u.5
for
25488563

.

sly-u.5
for
104649097

.

zma-u.5
for
100285432

.


Ortholog ID: 11434
Species ath sly zma bra vvi mtr hvu sot cit nta nta
Symbol AT5G42450 LOC104649097 LOC100285432 LOC103848549 LOC100265489 LOC25488563 LOC123444938 LOC102588557 LOC102618251 LOC107796785 LOC107805174
Function* Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein At5g42450, mitochondrial tetratricopeptide-like helical pentatricopeptide repeat-containing protein At5g42450, mitochondrial pentatricopeptide repeat-containing protein At5g42450, mitochondrial pentatricopeptide repeat-containing protein At5g42450, mitochondrial pentatricopeptide repeat-containing protein At5g42450, mitochondrial pentatricopeptide repeat-containing protein At5g42450, mitochondrial pentatricopeptide repeat-containing protein At5g42450, mitochondrial pentatricopeptide repeat-containing protein At5g42450, mitochondrial-like pentatricopeptide repeat-containing protein At5g42450, mitochondrial-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 4
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00240 Pyrimidine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 834252 104649097 100285432 103848549 100265489 25488563 123444938 102588557 102618251 107796785 107805174
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