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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5   100266933   DNA mismatch repair protein MSH3 
 vvi-r.5   100266933   DNA mismatch repair protein MSH3 
 vvi-u.5   104878427   DNA mismatch repair protein MSH3 
 vvi-u.5   104878373   DNA mismatch repair protein MSH3 
 ath-u.5   MSH3   homolog of DNA mismatch repair protein MSH3 
 gma-u.5   100789883   DNA mismatch repair protein MSH3 
 ppo-u.5   7474039   DNA mismatch repair protein MSH3 
 mtr-u.5   25485081   DNA mismatch repair protein MSH3 
 sly-u.5   101248748   DNA mismatch repair protein MSH3 
 osa-u.5   4337442   DNA mismatch repair protein MSH3 
 zma-u.5   103642206   mutS superfamily protein 

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Top 50 coexpressed genes to 100266933 (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100266933 (vvi-u.5 coexpression data)

CoexMap"100266933"


vviLOC100266933 | Entrez gene ID : 100266933      
Species vvi ath gma ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 4 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG vvi03430 [list] [network] Mismatch repair (33 genes)
GO BP
GO:0006312 [list] [network] mitotic recombination  (10 genes)  IEA  
GO:0006298 [list] [network] mismatch repair  (20 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (2597 genes)  IEA  
GO MF
GO:0030983 [list] [network] mismatched DNA binding  (16 genes)  IEA  
GO:0140664 [list] [network] ATP-dependent DNA damage sensor activity  (26 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2120 genes)  IEA  
Protein XP_010662491.2 [sequence] [blastp]
XP_019081850.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  mito 4  (predict for XP_010662491.2)
chlo 5,  mito 4  (predict for XP_019081850.2)
Subcellular
localization
TargetP
chlo 8  (predict for XP_010662491.2)
chlo 8  (predict for XP_019081850.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-u.5
for
100266933
vvi-r.5
for
100266933
vvi-u.5
for
104878427
vvi-u.5
for
104878373
ath-u.5
for
MSH3
gma-u.5
for
100789883
ppo-u.5
for
7474039
mtr-u.5
for
25485081
sly-u.5
for
101248748
osa-u.5
for
4337442
zma-u.5
for
103642206


Ortholog ID: 9045
Species vvi vvi ath gma bra ppo mtr ghi ghi bna cit sly sot nta nta osa zma tae hvu sbi bdi cre
Symbol LOC104878373 LOC104878427 MSH3 LOC100789883 LOC103861568 LOC7474039 LOC25485081 LOC107947306 LOC107936854 LOC106407650 LOC102630910 LOC101248748 LOC102598298 LOC107801185 LOC107762128 LOC4337442 LOC103642206 LOC542976 LOC123427130 LOC8085890 LOC100824247 CHLRE_09g397845v5
Function* DNA mismatch repair protein MSH3 DNA mismatch repair protein MSH3 homolog of DNA mismatch repair protein MSH3 DNA mismatch repair protein MSH3 DNA mismatch repair protein MSH3 DNA mismatch repair protein MSH3 DNA mismatch repair protein MSH3 DNA mismatch repair protein MSH3 DNA mismatch repair protein MSH3 DNA mismatch repair protein MSH3 DNA mismatch repair protein MSH3 DNA mismatch repair protein MSH3 DNA mismatch repair protein MSH3 DNA mismatch repair protein MSH3 DNA mismatch repair protein MSH3 DNA mismatch repair protein MSH3 mutS superfamily protein DNA mismatch repair protein MSH3 DNA mismatch repair protein MSH3 DNA mismatch repair protein MSH3 DNA mismatch repair protein MSH3 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 3
vvi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03440 Homologous recombination 4
ath03430 Mismatch repair 4
ath03460 Fanconi anemia pathway 3
ath03030 DNA replication 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03430 Mismatch repair 2
bra03460 Fanconi anemia pathway 2
bra03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 5
mtr03020 RNA polymerase 2
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03430 Mismatch repair 5
bna03460 Fanconi anemia pathway 4
bna00270 Cysteine and methionine metabolism 2
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 3
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03460 Fanconi anemia pathway 2
sot03030 DNA replication 2
sot03410 Base excision repair 2
sot03420 Nucleotide excision repair 2
sot03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03430 Mismatch repair 4
nta03460 Fanconi anemia pathway 2
nta03420 Nucleotide excision repair 2
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta03460 Fanconi anemia pathway 2
nta03020 RNA polymerase 2
nta03420 Nucleotide excision repair 2
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 7
tae03430 Mismatch repair 3
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03082 ATP-dependent chromatin remodeling 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 104878373 104878427 828659 100789883 103861568 7474039 25485081 107947306 107936854 106407650 102630910 101248748 102598298 107801185 107762128 4337442 103642206 542976 123427130 8085890 100824247 5720367
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