ATTED-II : GeneCoexpression result

Species	Gene	Description
vvi-u.5	100267354	DNA-directed RNA polymerase III subunit 1
vvi-r.5	100267354	DNA-directed RNA polymerase III subunit 1
ath-u.5	NRPC1	nuclear RNA polymerase C1
gma-u.5	100811292	DNA-directed RNA polymerase III subunit 1
bra-r.6	103851524	DNA-directed RNA polymerase III subunit 1
ppo-u.5	7467656	DNA-directed RNA polymerase III subunit 1
mtr-u.5	11412126	DNA-directed RNA polymerase III subunit 1
mtr-u.5	11410173	DNA-directed RNA polymerase III subunit 1
ghi-r.1	107885964	DNA-directed RNA polymerase III subunit 1
ghi-r.1	107950310	DNA-directed RNA polymerase III subunit 1
bna-r.1	106350139	DNA-directed RNA polymerase III subunit 1
bna-r.1	106385775	DNA-directed RNA polymerase III subunit 1
cit-r.1	102611247	DNA-directed RNA polymerase III subunit 1
sly-u.5	101265201	DNA-directed RNA polymerase III subunit 1
sot-r.1	102603938	DNA-directed RNA polymerase III subunit 1
nta-r.1	107797308	DNA-directed RNA polymerase III subunit 1
nta-r.1	107790357	DNA-directed RNA polymerase III subunit 1
osa-u.5	4336254	DNA-directed RNA polymerase III subunit 1
zma-u.5	103646285	DNA-directed RNA polymerase III subunit 1
tae-r.2	123063274	DNA-directed RNA polymerase III subunit 1
tae-r.2	123072219	DNA-directed RNA polymerase III subunit 1
tae-r.2	123080466	DNA-directed RNA polymerase III subunit 1
hvu-r.1	123401078	DNA-directed RNA polymerase III subunit 1-like
hvu-r.1	123430162	uncharacterized LOC123430162
sbi-r.1	8073709	DNA-directed RNA polymerase III subunit 1
bdi-r.1	100846820	DNA-directed RNA polymerase III subunit 1
bdi-r.1	100830443	DNA-directed RNA polymerase III subunit 1
cre-r.1	CHLRE_03g165750v5	uncharacterized protein

Annotation

functional annotation

KEGG

vvi03020 [list] [network] RNA polymerase (51 genes)

GO BP

GO:0006351 [list] [network] DNA-templated transcription

(199 genes)

IEA

GO CC

GO MF

GO:0003899 [list] [network] DNA-directed RNA polymerase activity	(30 genes)	IEA
GO:0003677 [list] [network] DNA binding	(1602 genes)	IEA

Protein

XP_059593422.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, golg 2, cysk_nucl 2, cyto 1, vacu 1, golg_plas 1

(predict for XP_059593422.1)

Subcellular
localization
TargetP

other 9

(predict for XP_059593422.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	vvi-u.5 for 100267354	vvi-r.5 for 100267354	ath-u.5 for NRPC1	gma-u.5 for 100811292	bra-r.6 for 103851524	ppo-u.5 for 7467656	mtr-u.5 for 11412126	mtr-u.5 for 11410173	ghi-r.1 for 107885964	ghi-r.1 for 107950310	bna-r.1 for 106350139	bna-r.1 for 106385775	cit-r.1 for 102611247	sly-u.5 for 101265201	sot-r.1 for 102603938	nta-r.1 for 107797308	nta-r.1 for 107790357	osa-u.5 for 4336254	zma-u.5 for 103646285	tae-r.2 for 123063274	tae-r.2 for 123072219	tae-r.2 for 123080466	hvu-r.1 for 123401078	hvu-r.1 for 123430162	sbi-r.1 for 8073709	bdi-r.1 for 100846820	bdi-r.1 for 100830443	cre-r.1 for CHLRE_03g165750v5

Ortholog

Ortholog ID: 7388

Species

vvi

ath

gma

bra

ppo

mtr

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

NRPC1

Function^*

DNA-directed RNA polymerase III subunit 1

nuclear RNA polymerase C1

DNA-directed RNA polymerase III subunit 1

DNA-directed RNA polymerase III subunit 1-like

uncharacterized LOC123430162

DNA-directed RNA polymerase III subunit 1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	2
vvi03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03013	Nucleocytoplasmic transport	3
ath03008	Ribosome biogenesis in eukaryotes	2
ath03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3
gma03008	Ribosome biogenesis in eukaryotes	2
gma03083	Polycomb repressive complex	2
gma03082	ATP-dependent chromatin remodeling	2
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03013	Nucleocytoplasmic transport	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	4
mtr03020	RNA polymerase	3
mtr03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03020	RNA polymerase	4
mtr03008	Ribosome biogenesis in eukaryotes	3
mtr03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03020	RNA polymerase	6
ghi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03020	RNA polymerase	6
ghi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	5
bna03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	7
bna03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03008	Ribosome biogenesis in eukaryotes	2
cit03018	RNA degradation	2
cit03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	6
sly03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03020	RNA polymerase	2
sot01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	9
nta03040	Spliceosome	4
nta03020	RNA polymerase	2
nta03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	9
nta03040	Spliceosome	4
nta03020	RNA polymerase	2
nta03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	5
osa03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03020	RNA polymerase	6
tae03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03018	RNA degradation	3
sbi03008	Ribosome biogenesis in eukaryotes	2
sbi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03013	Nucleocytoplasmic transport	5
bdi03020	RNA polymerase	3
bdi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03020	RNA polymerase	2

Expression

Expression pattern

Entrez Gene ID^*

100267354

836126

100811292

103851524

7467656

11412126

11410173

107885964

107950310

106350139

106385775

102611247

101265201

102603938

107797308

107790357

4336254

103646285

123080466

123180660

123040125

123401078

123430162

8073709

100846820

100830443

5729031

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 100267354 (vvi-u.5 coexpression data)

Top 50 enrichment test to 100267354 (vvi-u.5 coexpression data)


Species	vvi	ath	gma	bra	ppo	mtr	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	2	1	1	1	1	2	2	2	1	1	1	2	1	1	3	2	1	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100267354 (vvi-u.5 coexpression data)

Top 50 enrichment test to 100267354 (vvi-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**