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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5   100267865   cleavage and polyadenylation specificity factor subunit 2 
 vvi-r.5   100267865   cleavage and polyadenylation specificity factor subunit 2 
 ath-u.5   CPSF100   cleavage and polyadenylation specificity factor 100 
 gma-u.5   100796817   cleavage and polyadenylation specificity factor subunit 2 
 gma-u.5   100777002   cleavage and polyadenylation specificity factor subunit 2 
 ppo-u.5   18095012   cleavage and polyadenylation specificity factor subunit 2 
 mtr-u.5   25483257   cleavage and polyadenylation specificity factor subunit 2 
 sly-u.5   101254167   cleavage and polyadenylation specificity factor subunit 2 
 osa-u.5   4347905   cleavage and polyadenylation specificity factor subunit 2-like 
 zma-u.5   IDP798   Cleavage and polyadenylation specificity factor subunit 2 

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Top 50 coexpressed genes to 100267865 (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100267865 (vvi-u.5 coexpression data)

CoexMap"100267865"


vviLOC100267865 | Entrez gene ID : 100267865      
Species vvi ath gma ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 2 1 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG vvi03015 [list] [network] mRNA surveillance pathway (113 genes)
GO BP
GO:0006398 [list] [network] mRNA 3'-end processing by stem-loop binding and cleavage  (3 genes)  IEA  
GO CC
GO:0005847 [list] [network] mRNA cleavage and polyadenylation specificity factor complex  (8 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (1286 genes)  IEA  
Protein XP_002268591.1 [sequence] [blastp]
XP_059599296.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  chlo 3,  cyto_nucl 3  (predict for XP_002268591.1)
cyto 6,  chlo 2,  plas 1  (predict for XP_059599296.1)
Subcellular
localization
TargetP
other 8  (predict for XP_002268591.1)
other 4,  scret 4  (predict for XP_059599296.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-u.5
for
100267865
vvi-r.5
for
100267865
ath-u.5
for
CPSF100
gma-u.5
for
100796817
gma-u.5
for
100777002
ppo-u.5
for
18095012
mtr-u.5
for
25483257
sly-u.5
for
101254167
osa-u.5
for
4347905
zma-u.5
for
IDP798


Ortholog ID: 9689
Species vvi ath gma gma bra ppo mtr ghi ghi bna bna cit sly sot nta nta osa zma tae tae hvu sbi bdi bdi cre
Symbol LOC100267865 CPSF100 LOC100777002 LOC100796817 LOC103874248 LOC18095012 LOC25483257 LOC121211204 LOC121224393 LOC106348299 LOC111198678 LOC102616738 LOC101254167 LOC102602403 LOC107793580 LOC107766765 LOC4347905 IDP798 LOC123113814 LOC123123322 LOC123452843 LOC8079657 LOC100830470 LOC100835825 CHLRE_12g487600v5
Function* cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor 100 cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2-like cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2-like Cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 6
ath03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 3
gma03040 Spliceosome 3
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 3
bra04120 Ubiquitin mediated proteolysis 2
bra03040 Spliceosome 2
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 2
ppo00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 6
mtr00510 N-Glycan biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 9
ghi00510 N-Glycan biosynthesis 8
ghi00513 Various types of N-glycan biosynthesis 6
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 9
ghi00510 N-Glycan biosynthesis 8
ghi00513 Various types of N-glycan biosynthesis 6
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
bna03015 mRNA surveillance pathway 2
bna00261 Monobactam biosynthesis 2
bna00300 Lysine biosynthesis 2
bna01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
bna03015 mRNA surveillance pathway 2
bna00261 Monobactam biosynthesis 2
bna00300 Lysine biosynthesis 2
bna01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 4
sly03015 mRNA surveillance pathway 3
sly03020 RNA polymerase 2
sly03018 RNA degradation 2
sly00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 3
sot04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta03013 Nucleocytoplasmic transport 2
nta03250 Viral life cycle - HIV-1 2
nta03015 mRNA surveillance pathway 2
nta03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 4
nta03410 Base excision repair 4
nta03420 Nucleotide excision repair 4
nta03430 Mismatch repair 4
nta03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 3
zma03020 RNA polymerase 2
zma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 8
tae00970 Aminoacyl-tRNA biosynthesis 4
tae03013 Nucleocytoplasmic transport 2
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 6
tae03008 Ribosome biogenesis in eukaryotes 3
tae00970 Aminoacyl-tRNA biosynthesis 3
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 4
hvu03013 Nucleocytoplasmic transport 2
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 2
sbi03018 RNA degradation 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03015 mRNA surveillance pathway 6
bdi03013 Nucleocytoplasmic transport 3
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03015 mRNA surveillance pathway 5
bdi03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
cre01240 Biosynthesis of cofactors 2
cre03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100267865 832453 100777002 100796817 103874248 18095012 25483257 121211204 121224393 106348299 111198678 102616738 101254167 102602403 107793580 107766765 4347905 100285191 123113814 123123322 123452843 8079657 100830470 100835825 5716649
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