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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   LCL1   late elongated hypocotyl and circadian clock associated-1-like protein 1 
 gma-r.7   LCL1   late elongated hypocotyl and circadian clock associated-1-like protein 1 
 gma-u.5   MYB114   MYB transcription factor MYB114 
 gma-u.5   LCL3   LHY1/CCA1-like protein 
 gma-u.5   LCL4   LHY1/CCA1-like protein 
 mtr-u.5   11432385   protein LATE ELONGATED HYPOCOTYL 
 ppo-u.5   7478808   protein LATE ELONGATED HYPOCOTYL 
 ppo-u.5   7486811   protein LATE ELONGATED HYPOCOTYL 
 ath-u.5   LHY   Homeodomain-like superfamily protein 
 bra-r.6   103844616   protein LHY 
 bra-r.6   103836661   protein LHY 
 vvi-u.5   100250535   protein LATE ELONGATED HYPOCOTYL 
 ghi-r.1   107912274   protein LATE ELONGATED HYPOCOTYL 
 ghi-r.1   107923194   protein LATE ELONGATED HYPOCOTYL 
 ghi-r.1   107923949   protein LATE ELONGATED HYPOCOTYL 
 bna-r.1   125574804   protein LHY-like 
 bna-r.1   125575639   protein LHY-like 
 bna-r.1   125595220   protein LHY-like 
 cit-r.1   102627326   protein LATE ELONGATED HYPOCOTYL 
 sly-u.5   101261662   protein LATE ELONGATED HYPOCOTYL 
 sot-r.1   102601616   protein LHY 
 nta-r.1   107775222   protein LATE ELONGATED HYPOCOTYL-like 
 nta-r.1   107786145   protein LATE ELONGATED HYPOCOTYL 
 osa-u.5   4344703   protein LHY 
 zma-u.5   100281091   LHY protein 
 zma-u.5   100192868   uncharacterized LOC100192868 
 tae-r.2   123147271   protein LHY 
 tae-r.2   123167076   protein LHY 
 tae-r.2   100682474   protein LHY 
 hvu-r.1   123407924   protein LHY 
 sbi-r.1   8080836   protein CCA1 
 bdi-r.1   100838310   protein CCA1 

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Top 50 coexpressed genes to LCL1 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to LCL1 (gma-u.5 coexpression data)

CoexMap"100271888"


gmaLCL1 | Entrez gene ID : 100271888      
Species gma mtr ppo ath bra vvi ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 5 1 2 1 2 1 3 3 1 1 1 2 1 2 3 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx04712 [list] [network] Circadian rhythm - plant (105 genes)
GO BP
GO CC
GO MF
GO:0003677 [list] [network] DNA binding  (3517 genes)  IEA  
Protein NP_001235187.2 [sequence] [blastp]
XP_006598675.1 [sequence] [blastp]
XP_006598678.1 [sequence] [blastp]
XP_014623886.1 [sequence] [blastp]
XP_014623887.1 [sequence] [blastp]
XP_014623888.1 [sequence] [blastp]
XP_014623889.1 [sequence] [blastp]
XP_014623890.1 [sequence] [blastp]
XP_014623891.1 [sequence] [blastp]
XP_014623892.1 [sequence] [blastp]
XP_040866090.1 [sequence] [blastp]
XP_040866091.1 [sequence] [blastp]
XP_040866092.1 [sequence] [blastp]
XP_040866093.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_001235187.2)
nucl 10  (predict for XP_006598675.1)
nucl 10  (predict for XP_006598678.1)
nucl 10  (predict for XP_014623886.1)
nucl 10  (predict for XP_014623887.1)
nucl 10  (predict for XP_014623888.1)
nucl 10  (predict for XP_014623889.1)
nucl 10  (predict for XP_014623890.1)
nucl 10  (predict for XP_014623891.1)
nucl 10  (predict for XP_014623892.1)
nucl 10  (predict for XP_040866090.1)
nucl 10  (predict for XP_040866091.1)
nucl 10  (predict for XP_040866092.1)
nucl 10  (predict for XP_040866093.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001235187.2)
other 8  (predict for XP_006598675.1)
other 8  (predict for XP_006598678.1)
other 8  (predict for XP_014623886.1)
other 8  (predict for XP_014623887.1)
other 8  (predict for XP_014623888.1)
other 8  (predict for XP_014623889.1)
other 8  (predict for XP_014623890.1)
other 8  (predict for XP_014623891.1)
other 8  (predict for XP_014623892.1)
other 8  (predict for XP_040866090.1)
other 8  (predict for XP_040866091.1)
other 8  (predict for XP_040866092.1)
other 8  (predict for XP_040866093.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
LCL1
gma-r.7
for
LCL1
gma-u.5
for
MYB114
gma-u.5
for
LCL3
gma-u.5
for
LCL4
mtr-u.5
for
11432385
ppo-u.5
for
7478808
ppo-u.5
for
7486811
ath-u.5
for
LHY
bra-r.6
for
103844616
bra-r.6
for
103836661
vvi-u.5
for
100250535
ghi-r.1
for
107912274
ghi-r.1
for
107923194
ghi-r.1
for
107923949
bna-r.1
for
125574804
bna-r.1
for
125575639
bna-r.1
for
125595220
cit-r.1
for
102627326
sly-u.5
for
101261662
sot-r.1
for
102601616
nta-r.1
for
107775222
nta-r.1
for
107786145
osa-u.5
for
4344703
zma-u.5
for
100281091
zma-u.5
for
100192868
tae-r.2
for
123147271
tae-r.2
for
123167076
tae-r.2
for
100682474
hvu-r.1
for
123407924
sbi-r.1
for
8080836
bdi-r.1
for
100838310


Ortholog ID: 5626
Species gma gma gma mtr ppo ppo ath bra bra vvi ghi ghi ghi bna bna bna cit sly sot nta nta osa zma zma tae tae tae hvu sbi bdi
Symbol LCL1 MYB114 LCL4 LOC11432385 LOC7478808 LOC7486811 LHY LOC103844616 LOC103836661 LOC100250535 LOC107912274 LOC121210912 LOC107923114 LOC125574804 LOC125595220 LOC106370900 LOC102627326 LOC101261662 LOC102601616 LOC107775222 LOC107786145 LOC4344703 LOC100281091 LOC100192868 LOC123147271 LOC123167076 LOC100682474 LOC123407924 LOC8080836 LOC100838310
Function* late elongated hypocotyl and circadian clock associated-1-like protein 1 MYB transcription factor MYB114 LHY1/CCA1-like protein protein LATE ELONGATED HYPOCOTYL protein LATE ELONGATED HYPOCOTYL protein LATE ELONGATED HYPOCOTYL Homeodomain-like superfamily protein protein LHY protein LHY protein LATE ELONGATED HYPOCOTYL protein LATE ELONGATED HYPOCOTYL protein LATE ELONGATED HYPOCOTYL protein LATE ELONGATED HYPOCOTYL protein LHY-like protein LHY-like protein LHY protein LATE ELONGATED HYPOCOTYL protein LATE ELONGATED HYPOCOTYL protein LHY protein LATE ELONGATED HYPOCOTYL-like protein LATE ELONGATED HYPOCOTYL protein LHY LHY protein uncharacterized LOC100192868 protein LHY protein LHY protein LHY protein LHY protein CCA1 protein CCA1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 4
gma00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04712 Circadian rhythm - plant 3
ath00270 Cysteine and methionine metabolism 2
ath00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 3
bna00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00620 Pyruvate metabolism 2
nta00710 Carbon fixation by Calvin cycle 2
nta01200 Carbon metabolism 2
nta04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00620 Pyruvate metabolism 2
nta00710 Carbon fixation by Calvin cycle 2
nta01200 Carbon metabolism 2
nta04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 3
zma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 3
tae00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00562 Inositol phosphate metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100271888 778086 100101859 11432385 7478808 7486811 839341 103844616 103836661 100250535 107912274 121210912 107923114 125574804 125595220 106370900 102627326 101261662 102601616 107775222 107786145 4344703 100281091 100192868 123147271 123167076 100682474 123407924 8080836 100838310
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