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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   125575639   protein LHY-like 
 bna-r.1   125574804   protein LHY-like 
 bna-r.1   125595220   protein LHY-like 
 bna-r.1   106407083   protein LHY 
 bra-r.6   103844616   protein LHY 
 bra-r.6   103836661   protein LHY 
 ath-u.5   LHY   Homeodomain-like superfamily protein 
 ghi-r.1   107912274   protein LATE ELONGATED HYPOCOTYL 
 ghi-r.1   107923114   protein LATE ELONGATED HYPOCOTYL 
 ghi-r.1   107923194   protein LATE ELONGATED HYPOCOTYL 
 cit-r.1   102627326   protein LATE ELONGATED HYPOCOTYL 
 gma-u.5   MYB114   MYB transcription factor MYB114 
 gma-u.5   LCL4   LHY1/CCA1-like protein 
 gma-u.5   LCL1   late elongated hypocotyl and circadian clock associated-1-like protein 1 
 vvi-u.5   100250535   protein LATE ELONGATED HYPOCOTYL 
 ppo-u.5   7478808   protein LATE ELONGATED HYPOCOTYL 
 ppo-u.5   7486811   protein LATE ELONGATED HYPOCOTYL 
 mtr-u.5   11432385   protein LATE ELONGATED HYPOCOTYL 
 sly-u.5   101261662   protein LATE ELONGATED HYPOCOTYL 
 sot-r.1   102601616   protein LHY 
 nta-r.1   107786145   protein LATE ELONGATED HYPOCOTYL 
 nta-r.1   107775222   protein LATE ELONGATED HYPOCOTYL-like 
 osa-u.5   4344703   protein LHY 
 zma-u.5   100281091   LHY protein 
 zma-u.5   100192868   uncharacterized LOC100192868 
 tae-r.2   123167076   protein LHY 
 tae-r.2   123147271   protein LHY 
 tae-r.2   100682474   protein LHY 
 hvu-r.1   123407924   protein LHY 
 sbi-r.1   8080836   protein CCA1 
 bdi-r.1   100838310   protein CCA1 

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Top 50 coexpressed genes to 125575639 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 125575639 (bna-r.1 coexpression data)

CoexMap"125575639"


bnaLOC125575639 | Entrez gene ID : 125575639    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 2 1 3 1 3 1 2 1 1 1 2 1 2 3 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna04712 [list] [network] Circadian rhythm - plant (144 genes)
GO BP
GO CC
GO MF
GO:0003677 [list] [network] DNA binding  (6522 genes)  IEA  
Protein XP_048627650.1 [sequence] [blastp]
XP_048627651.1 [sequence] [blastp]
XP_048627652.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_048627650.1)
nucl 10  (predict for XP_048627651.1)
nucl 10  (predict for XP_048627652.1)
Subcellular
localization
TargetP
other 9  (predict for XP_048627650.1)
other 9  (predict for XP_048627651.1)
other 9  (predict for XP_048627652.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
125575639
bna-r.1
for
125574804
bna-r.1
for
125595220
bna-r.1
for
106407083
bra-r.6
for
103844616
bra-r.6
for
103836661
ath-u.5
for
LHY
ghi-r.1
for
107912274
ghi-r.1
for
107923114
ghi-r.1
for
107923194
cit-r.1
for
102627326
gma-u.5
for
MYB114
gma-u.5
for
LCL4
gma-u.5
for
LCL1
vvi-u.5
for
100250535
ppo-u.5
for
7478808
ppo-u.5
for
7486811
mtr-u.5
for
11432385
sly-u.5
for
101261662
sot-r.1
for
102601616
nta-r.1
for
107786145
nta-r.1
for
107775222
osa-u.5
for
4344703
zma-u.5
for
100281091
zma-u.5
for
100192868
tae-r.2
for
123167076
tae-r.2
for
123147271
tae-r.2
for
100682474
hvu-r.1
for
123407924
sbi-r.1
for
8080836
bdi-r.1
for
100838310


Ortholog ID: 5626
Species bna bna bna bra bra ath ghi ghi ghi cit gma gma gma vvi ppo ppo mtr sly sot nta nta osa zma zma tae tae tae hvu sbi bdi
Symbol LOC125574804 LOC125595220 LOC106370900 LOC103844616 LOC103836661 LHY LOC107912274 LOC107923114 LOC121210912 LOC102627326 MYB114 LCL4 LCL1 LOC100250535 LOC7478808 LOC7486811 LOC11432385 LOC101261662 LOC102601616 LOC107786145 LOC107775222 LOC4344703 LOC100281091 LOC100192868 LOC123167076 LOC123147271 LOC100682474 LOC123407924 LOC8080836 LOC100838310
Function* protein LHY-like protein LHY-like protein LHY protein LHY protein LHY Homeodomain-like superfamily protein protein LATE ELONGATED HYPOCOTYL protein LATE ELONGATED HYPOCOTYL protein LATE ELONGATED HYPOCOTYL protein LATE ELONGATED HYPOCOTYL MYB transcription factor MYB114 LHY1/CCA1-like protein late elongated hypocotyl and circadian clock associated-1-like protein 1 protein LATE ELONGATED HYPOCOTYL protein LATE ELONGATED HYPOCOTYL protein LATE ELONGATED HYPOCOTYL protein LATE ELONGATED HYPOCOTYL protein LATE ELONGATED HYPOCOTYL protein LHY protein LATE ELONGATED HYPOCOTYL protein LATE ELONGATED HYPOCOTYL-like protein LHY LHY protein uncharacterized LOC100192868 protein LHY protein LHY protein LHY protein LHY protein CCA1 protein CCA1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 3
bna00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04712 Circadian rhythm - plant 3
ath00270 Cysteine and methionine metabolism 2
ath00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 4
gma00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00620 Pyruvate metabolism 2
nta00710 Carbon fixation by Calvin cycle 2
nta01200 Carbon metabolism 2
nta04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00620 Pyruvate metabolism 2
nta00710 Carbon fixation by Calvin cycle 2
nta01200 Carbon metabolism 2
nta04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 3
zma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 3
tae00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00562 Inositol phosphate metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 125574804 125595220 106370900 103844616 103836661 839341 107912274 107923114 121210912 102627326 778086 100101859 100271888 100250535 7478808 7486811 11432385 101261662 102601616 107786145 107775222 4344703 100281091 100192868 123167076 123147271 100682474 123407924 8080836 100838310
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