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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   100272613   uncharacterized LOC100272613 
 zma-r.6   100272613   uncharacterized LOC100272613 
 zma-m.5   100272613   uncharacterized LOC100272613 
 sbi-r.1   8068836   RNA pseudouridine synthase 1 
 osa-u.5   4352512   RNA pseudouridine synthase 1-like 
 tae-r.2   123110762   RNA pseudouridine synthase 1 
 tae-r.2   123102576   RNA pseudouridine synthase 1 
 tae-r.2   123119763   RNA pseudouridine synthase 1 
 hvu-r.1   123398344   RNA pseudouridine synthase 1 
 bdi-r.1   100828441   RNA pseudouridine synthase 1 
 ath-u.5   AT1G56345   Pseudouridine synthase family protein 
 gma-u.5   100790926   RNA pseudouridine synthase 1 
 sly-u.5   101246868   RNA pseudouridine synthase 1 
 bra-r.6   103849447   RNA pseudouridine synthase 1 
 vvi-u.5   100266581   RNA pseudouridine synthase 1 
 ppo-u.5   18104013   RNA pseudouridine synthase 1 
 ghi-r.1   107893929   RNA pseudouridine synthase 1 
 ghi-r.1   107933791   RNA pseudouridine synthase 1 
 bna-r.1   106346820   RNA pseudouridine synthase 1-like 
 bna-r.1   106390777   RNA pseudouridine synthase 1-like 
 sot-r.1   102604156   RNA pseudouridine synthase 1 
 nta-r.1   107814652   RNA pseudouridine synthase 1 
 nta-r.1   107811777   RNA pseudouridine synthase 1 
 cre-r.1   CHLRE_02g144002v5   uncharacterized protein 

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Top 50 coexpressed genes to 100272613 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100272613 (zma-u.5 coexpression data)

CoexMap"100272613"


zmaLOC100272613 | Entrez gene ID : 100272613      
Species zma sbi osa tae hvu bdi ath gma sly bra vvi ppo ghi bna sot nta cre mtr cit
Paralog 3 1 1 3 1 1 1 1 1 1 1 1 2 2 1 2 1 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000455 [list] [network] enzyme-directed rRNA pseudouridine synthesis  (7 genes)  IEA  
GO CC
GO MF
GO:0009982 [list] [network] pseudouridine synthase activity  (21 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1549 genes)  IEA  
Protein NP_001140548.1 [sequence] [blastp]
NP_001335725.1 [sequence] [blastp]
NP_001335726.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  chlo 2,  nucl 1  (predict for NP_001140548.1)
cyto 6,  cysk 2,  chlo 1,  nucl 1,  plas 1,  nucl_plas 1  (predict for NP_001335725.1)
cyto 6,  cysk 2,  nucl 1,  plas 1,  nucl_plas 1  (predict for NP_001335726.1)
Subcellular
localization
TargetP
scret 3,  other 3  (predict for NP_001140548.1)
chlo 5,  other 4  (predict for NP_001335725.1)
chlo 6,  other 3  (predict for NP_001335726.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
100272613
zma-r.6
for
100272613
zma-m.5
for
100272613
sbi-r.1
for
8068836
osa-u.5
for
4352512
tae-r.2
for
123110762
tae-r.2
for
123102576
tae-r.2
for
123119763
hvu-r.1
for
123398344
bdi-r.1
for
100828441
ath-u.5
for
AT1G56345
gma-u.5
for
100790926
sly-u.5
for
101246868
bra-r.6
for
103849447
vvi-u.5
for
100266581
ppo-u.5
for
18104013
ghi-r.1
for
107893929
ghi-r.1
for
107933791
bna-r.1
for
106346820
bna-r.1
for
106390777
sot-r.1
for
102604156
nta-r.1
for
107814652
nta-r.1
for
107811777
cre-r.1
for
CHLRE_02g144002v5


Ortholog ID: 10522
Species zma sbi osa tae tae tae hvu bdi ath gma sly bra vvi ppo ghi ghi bna bna sot nta nta cre
Symbol LOC100272613 LOC8068836 LOC4352512 LOC123110762 LOC123102576 LOC123119763 LOC123398344 LOC100828441 AT1G56345 LOC100790926 LOC101246868 LOC103849447 LOC100266581 LOC18104013 LOC107893929 LOC107933791 LOC106346820 LOC106390777 LOC102604156 LOC107814652 LOC107811777 CHLRE_02g144002v5
Function* uncharacterized LOC100272613 RNA pseudouridine synthase 1 RNA pseudouridine synthase 1-like RNA pseudouridine synthase 1 RNA pseudouridine synthase 1 RNA pseudouridine synthase 1 RNA pseudouridine synthase 1 RNA pseudouridine synthase 1 Pseudouridine synthase family protein RNA pseudouridine synthase 1 RNA pseudouridine synthase 1 RNA pseudouridine synthase 1 RNA pseudouridine synthase 1 RNA pseudouridine synthase 1 RNA pseudouridine synthase 1 RNA pseudouridine synthase 1 RNA pseudouridine synthase 1-like RNA pseudouridine synthase 1-like RNA pseudouridine synthase 1 RNA pseudouridine synthase 1 RNA pseudouridine synthase 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00900 Terpenoid backbone biosynthesis 3
tae00230 Purine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00220 Arginine biosynthesis 3
tae00240 Pyrimidine metabolism 3
tae00250 Alanine, aspartate and glutamate metabolism 3
tae01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 5
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 2
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00860 Porphyrin metabolism 2
bdi01240 Biosynthesis of cofactors 2
bdi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 8
ath04145 Phagosome 3
ath03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01230 Biosynthesis of amino acids 2
vvi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 3
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 3
bna00590 Arachidonic acid metabolism 2
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 2
nta03013 Nucleocytoplasmic transport 2
nta00510 N-Glycan biosynthesis 2
nta04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100272613 8068836 4352512 123110762 123102576 123119763 123398344 100828441 842088 100790926 101246868 103849447 100266581 18104013 107893929 107933791 106346820 106390777 102604156 107814652 107811777 5720475
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