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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT1G56345   Pseudouridine synthase family protein 
 ath-r.7   AT1G56345   Pseudouridine synthase family protein 
 ath-m.9   AT1G56345   Pseudouridine synthase family protein 
 ath-e.2   AT1G56345   Pseudouridine synthase family protein 
 ath-m.4.bio   AT1G56345   Pseudouridine synthase family protein 
 ath-m.4.hor   AT1G56345   Pseudouridine synthase family protein 
 ath-m.4.lig   AT1G56345   Pseudouridine synthase family protein 
 ath-m.4.str   AT1G56345   Pseudouridine synthase family protein 
 ath-m.4.tis   AT1G56345   Pseudouridine synthase family protein 
 bra-r.6   103849447   RNA pseudouridine synthase 1 
 bna-r.1   106346820   RNA pseudouridine synthase 1-like 
 bna-r.1   106390777   RNA pseudouridine synthase 1-like 
 ghi-r.1   107893929   RNA pseudouridine synthase 1 
 ghi-r.1   107933791   RNA pseudouridine synthase 1 
 gma-u.5   100790926   RNA pseudouridine synthase 1 
 vvi-u.5   100266581   RNA pseudouridine synthase 1 
 ppo-u.5   18104013   RNA pseudouridine synthase 1 
 sly-u.5   101246868   RNA pseudouridine synthase 1 
 sot-r.1   102604156   RNA pseudouridine synthase 1 
 nta-r.1   107814652   RNA pseudouridine synthase 1 
 nta-r.1   107811777   RNA pseudouridine synthase 1 
 osa-u.5   4352512   RNA pseudouridine synthase 1-like 
 zma-u.5   100272613   uncharacterized LOC100272613 
 tae-r.2   123110762   RNA pseudouridine synthase 1 
 tae-r.2   123102576   RNA pseudouridine synthase 1 
 tae-r.2   123119763   RNA pseudouridine synthase 1 
 hvu-r.1   123398344   RNA pseudouridine synthase 1 
 sbi-r.1   8068836   RNA pseudouridine synthase 1 
 bdi-r.1   100828441   RNA pseudouridine synthase 1 
 cre-r.1   CHLRE_02g144002v5   uncharacterized protein 

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Top 50 coexpressed genes to AT1G56345 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT1G56345 (ath-u.5 coexpression data)

CoexMap"842088"


athAT1G56345 | Entrez gene ID : 842088      
Species ath bra bna ghi gma vvi ppo sly sot nta osa zma tae hvu sbi bdi cre mtr cit
Paralog 9 1 2 2 1 1 1 1 1 2 1 1 3 1 1 1 1 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  IDA ISM  
GO MF
GO:0009982 [list] [network] pseudouridine synthase activity  (18 genes)  TAS  
Protein NP_001322451.1 [sequence] [blastp]
NP_176031.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  extr 2,  nucl 1,  cyto 1,  mito 1,  cyto_nucl 1,  E.R._vacu 1  (predict for NP_001322451.1)
chlo 8,  nucl 1,  mito 1,  extr 1  (predict for NP_176031.2)
Subcellular
localization
TargetP
scret 4  (predict for NP_001322451.1)
scret 4  (predict for NP_176031.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT1G56345
ath-r.7
for
AT1G56345
ath-m.9
for
AT1G56345
ath-e.2
for
AT1G56345
ath-m.4.bio
for
AT1G56345
ath-m.4.hor
for
AT1G56345
ath-m.4.lig
for
AT1G56345
ath-m.4.str
for
AT1G56345
ath-m.4.tis
for
AT1G56345
bra-r.6
for
103849447
bna-r.1
for
106346820
bna-r.1
for
106390777
ghi-r.1
for
107893929
ghi-r.1
for
107933791
gma-u.5
for
100790926
vvi-u.5
for
100266581
ppo-u.5
for
18104013
sly-u.5
for
101246868
sot-r.1
for
102604156
nta-r.1
for
107814652
nta-r.1
for
107811777
osa-u.5
for
4352512
zma-u.5
for
100272613
tae-r.2
for
123110762
tae-r.2
for
123102576
tae-r.2
for
123119763
hvu-r.1
for
123398344
sbi-r.1
for
8068836
bdi-r.1
for
100828441
cre-r.1
for
CHLRE_02g144002v5


Ortholog ID: 10522
Species ath bra bna bna ghi ghi gma vvi ppo sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol AT1G56345 LOC103849447 LOC106346820 LOC106390777 LOC107893929 LOC107933791 LOC100790926 LOC100266581 LOC18104013 LOC101246868 LOC102604156 LOC107814652 LOC107811777 LOC4352512 LOC100272613 LOC123110762 LOC123102576 LOC123119763 LOC123398344 LOC8068836 LOC100828441 CHLRE_02g144002v5
Function* Pseudouridine synthase family protein RNA pseudouridine synthase 1 RNA pseudouridine synthase 1-like RNA pseudouridine synthase 1-like RNA pseudouridine synthase 1 RNA pseudouridine synthase 1 RNA pseudouridine synthase 1 RNA pseudouridine synthase 1 RNA pseudouridine synthase 1 RNA pseudouridine synthase 1 RNA pseudouridine synthase 1 RNA pseudouridine synthase 1 RNA pseudouridine synthase 1 RNA pseudouridine synthase 1-like uncharacterized LOC100272613 RNA pseudouridine synthase 1 RNA pseudouridine synthase 1 RNA pseudouridine synthase 1 RNA pseudouridine synthase 1 RNA pseudouridine synthase 1 RNA pseudouridine synthase 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 8
ath04145 Phagosome 3
ath03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 3
bna00590 Arachidonic acid metabolism 2
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01230 Biosynthesis of amino acids 2
vvi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 3
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 2
nta03013 Nucleocytoplasmic transport 2
nta00510 N-Glycan biosynthesis 2
nta04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00900 Terpenoid backbone biosynthesis 3
tae00230 Purine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00220 Arginine biosynthesis 3
tae00240 Pyrimidine metabolism 3
tae00250 Alanine, aspartate and glutamate metabolism 3
tae01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 5
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 2
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00860 Porphyrin metabolism 2
bdi01240 Biosynthesis of cofactors 2
bdi00970 Aminoacyl-tRNA biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842088 103849447 106346820 106390777 107893929 107933791 100790926 100266581 18104013 101246868 102604156 107814652 107811777 4352512 100272613 123110762 123102576 123119763 123398344 8068836 100828441 5720475
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