Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_02g144002v5   uncharacterized protein 
 ath-u.5   AT1G56345   Pseudouridine synthase family protein 
 gma-u.5   100790926   RNA pseudouridine synthase 1 
 sly-u.5   101246868   RNA pseudouridine synthase 1 
 osa-u.5   4352512   RNA pseudouridine synthase 1-like 
 zma-u.5   100272613   uncharacterized LOC100272613 
 vvi-u.5   100266581   RNA pseudouridine synthase 1 
 ppo-u.5   18104013   RNA pseudouridine synthase 1 

close


Top 50 coexpressed genes to CHLRE_02g144002v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to CHLRE_02g144002v5 (cre-r.1 coexpression data)

CoexMap"5720475"


creCHLRE_02g144002v5 | Entrez gene ID : 5720475    
Species cre ath gma sly osa zma vvi ppo hvu mtr sot tae nta bra cit ghi bna bdi sbi
Paralog 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0001522 [list] [network] pseudouridine synthesis  (29 genes)  IEA  
GO CC
GO MF
GO:0009982 [list] [network] pseudouridine synthase activity  (23 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (670 genes)  IEA  
Protein XP_042927761.1 [sequence] [blastp]
XP_042927762.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 7,  chlo 3  (predict for XP_042927761.1)
mito 8,  chlo 2  (predict for XP_042927762.1)
Subcellular
localization
TargetP
chlo 8,  mito 3  (predict for XP_042927761.1)
chlo 8,  mito 3  (predict for XP_042927762.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_02g144002v5

.
ath-u.5
for
AT1G56345

.
gma-u.5
for
100790926

.
sly-u.5
for
101246868

.
osa-u.5
for
4352512

.
zma-u.5
for
100272613

.
vvi-u.5
for
100266581

.
ppo-u.5
for
18104013

.


Ortholog ID: 10522
Species ath gma sly osa zma bra vvi ppo tae tae hvu ghi ghi bna bna cre sbi sot bdi nta nta
Symbol AT1G56345 LOC100790926 LOC101246868 LOC4352512 LOC100272613 LOC103849447 LOC100266581 LOC18104013 LOC123110762 LOC123102576 LOC123398344 LOC107933791 LOC107893929 LOC106346820 LOC106390777 CHLRE_02g144002v5 LOC8068836 LOC102604156 LOC100828441 LOC107811777 LOC107814652
Function* Pseudouridine synthase family protein RNA pseudouridine synthase 1 RNA pseudouridine synthase 1 RNA pseudouridine synthase 1-like uncharacterized LOC100272613 RNA pseudouridine synthase 1 RNA pseudouridine synthase 1 RNA pseudouridine synthase 1 RNA pseudouridine synthase 1 RNA pseudouridine synthase 1 RNA pseudouridine synthase 1 RNA pseudouridine synthase 1 RNA pseudouridine synthase 1 RNA pseudouridine synthase 1-like RNA pseudouridine synthase 1-like uncharacterized protein RNA pseudouridine synthase 1 RNA pseudouridine synthase 1 RNA pseudouridine synthase 1 RNA pseudouridine synthase 1 RNA pseudouridine synthase 1
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 8
ath04145 Phagosome 3
ath03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01230 Biosynthesis of amino acids 2
vvi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 3
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00900 Terpenoid backbone biosynthesis 3
tae00230 Purine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00220 Arginine biosynthesis 3
tae00240 Pyrimidine metabolism 3
tae00250 Alanine, aspartate and glutamate metabolism 3
tae01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 2
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 3
bna00590 Arachidonic acid metabolism 2
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00860 Porphyrin metabolism 2
bdi01240 Biosynthesis of cofactors 2
bdi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 2
nta03013 Nucleocytoplasmic transport 2
nta00510 N-Glycan biosynthesis 2
nta04141 Protein processing in endoplasmic reticulum 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842088 100790926 101246868 4352512 100272613 103849447 100266581 18104013 123110762 123102576 123398344 107933791 107893929 106346820 106390777 5720475 8068836 102604156 100828441 107811777 107814652
The preparation time of this page was 0.3 [sec].