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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   100278528   uncharacterized LOC100278528 
 zma-r.6   100278528   uncharacterized LOC100278528 
 sbi-r.1   8073178   protein ROOT PRIMORDIUM DEFECTIVE 1 
 osa-u.5   4340709   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 tae-r.2   123170334   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 tae-r.2   123159218   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 tae-r.2   123150966   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 hvu-r.1   123408643   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 bdi-r.1   100827622   protein WHAT'S THIS FACTOR 1 homolog 
 ath-u.5   AT2G31290   Ubiquitin carboxyl-terminal hydrolase family protein 
 gma-u.5   100814115   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 sly-u.5   101265230   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 bra-r.6   103868268   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 vvi-u.5   100253756   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 ppo-u.5   7492463   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 mtr-u.5   11417849   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 mtr-u.5   11438267   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 mtr-u.5   11413051   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 ghi-r.1   107951623   protein WHAT'S THIS FACTOR 1, chloroplastic 
 bna-r.1   106381487   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic-like 
 bna-r.1   106425464   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic-like 
 sot-r.1   102590253   protein ROOT PRIMORDIUM DEFECTIVE 1 
 cit-r.1   102610559   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 nta-r.1   107816837   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 nta-r.1   107763120   protein ROOT PRIMORDIUM DEFECTIVE 1 

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Top 50 coexpressed genes to 100278528 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100278528 (zma-u.5 coexpression data)

CoexMap"100278528"


zmaLOC100278528 | Entrez gene ID : 100278528      
Species zma sbi osa tae hvu bdi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 2 1 1 3 1 1 1 1 1 1 1 1 3 1 2 1 1 2 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (1549 genes)  IEA  
Protein NP_001145245.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  cyto 4,  nucl 2  (predict for NP_001145245.2)
Subcellular
localization
TargetP
chlo 7,  mito 3  (predict for NP_001145245.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
100278528
zma-r.6
for
100278528
sbi-r.1
for
8073178
osa-u.5
for
4340709
tae-r.2
for
123170334
tae-r.2
for
123159218
tae-r.2
for
123150966
hvu-r.1
for
123408643
bdi-r.1
for
100827622
ath-u.5
for
AT2G31290
gma-u.5
for
100814115
sly-u.5
for
101265230
bra-r.6
for
103868268
vvi-u.5
for
100253756
ppo-u.5
for
7492463
mtr-u.5
for
11417849
mtr-u.5
for
11438267
mtr-u.5
for
11413051
ghi-r.1
for
107951623
bna-r.1
for
106381487
bna-r.1
for
106425464
sot-r.1
for
102590253
cit-r.1
for
102610559
nta-r.1
for
107816837
nta-r.1
for
107763120


Ortholog ID: 10014
Species zma sbi osa tae tae tae hvu bdi ath gma sly bra vvi ppo mtr mtr mtr ghi bna bna sot cit nta nta
Symbol LOC100278528 LOC8073178 LOC4340709 LOC123170334 LOC123159218 LOC123150966 LOC123408643 LOC100827622 AT2G31290 LOC100814115 LOC101265230 LOC103868268 LOC100253756 LOC7492463 LOC11438267 LOC11413051 LOC11445827 LOC107951623 LOC106381487 LOC106425464 LOC102590253 LOC102610559 LOC107816837 LOC107763120
Function* uncharacterized LOC100278528 protein ROOT PRIMORDIUM DEFECTIVE 1 protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog Ubiquitin carboxyl-terminal hydrolase family protein protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic-like protein WHAT'S THIS FACTOR 1 homolog, chloroplastic-like protein ROOT PRIMORDIUM DEFECTIVE 1 protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein ROOT PRIMORDIUM DEFECTIVE 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 4
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04122 Sulfur relay system 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
bra00920 Sulfur metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00600 Sphingolipid metabolism 3
mtr04382 Cornified envelope formation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00600 Sphingolipid metabolism 3
mtr04382 Cornified envelope formation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 2
sot04144 Endocytosis 2
sot00562 Inositol phosphate metabolism 2
sot04070 Phosphatidylinositol signaling system 2
sot04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00010 Glycolysis / Gluconeogenesis 2
cit01230 Biosynthesis of amino acids 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100278528 8073178 4340709 123170334 123159218 123150966 123408643 100827622 817686 100814115 101265230 103868268 100253756 7492463 11438267 11413051 11445827 107951623 106381487 106425464 102590253 102610559 107816837 107763120
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