ATTED-II : GeneCoexpression result

Orthologous genes in OrthoFinder^**

Species	Gene	Description
mtr-u.5	11413051	protein WHAT'S THIS FACTOR 1 homolog, chloroplastic
mtr-r.5	11413051	protein WHAT'S THIS FACTOR 1 homolog, chloroplastic
mtr-u.5	11445827	protein WHAT'S THIS FACTOR 1 homolog, chloroplastic
mtr-u.5	11438267	protein WHAT'S THIS FACTOR 1 homolog, chloroplastic
mtr-u.5	11417849	protein WHAT'S THIS FACTOR 1 homolog, chloroplastic
gma-u.5	100814115	protein WHAT'S THIS FACTOR 1 homolog, chloroplastic
ppo-u.5	7492463	protein WHAT'S THIS FACTOR 1 homolog, chloroplastic
ath-u.5	AT2G31290	Ubiquitin carboxyl-terminal hydrolase family protein
bra-r.6	103868268	protein WHAT'S THIS FACTOR 1 homolog, chloroplastic
vvi-u.5	100253756	protein WHAT'S THIS FACTOR 1 homolog, chloroplastic
ghi-r.1	107951623	protein WHAT'S THIS FACTOR 1, chloroplastic
bna-r.1	106381487	protein WHAT'S THIS FACTOR 1 homolog, chloroplastic-like
bna-r.1	106425464	protein WHAT'S THIS FACTOR 1 homolog, chloroplastic-like
cit-r.1	102610559	protein WHAT'S THIS FACTOR 1 homolog, chloroplastic
sly-u.5	101265230	protein WHAT'S THIS FACTOR 1 homolog, chloroplastic
sot-r.1	102590253	protein ROOT PRIMORDIUM DEFECTIVE 1
nta-r.1	107816837	protein WHAT'S THIS FACTOR 1 homolog, chloroplastic
nta-r.1	107763120	protein ROOT PRIMORDIUM DEFECTIVE 1
osa-u.5	4340709	protein WHAT'S THIS FACTOR 1 homolog, chloroplastic
zma-u.5	100278528	uncharacterized LOC100278528
tae-r.2	123170334	protein WHAT'S THIS FACTOR 1 homolog, chloroplastic
tae-r.2	123159218	protein WHAT'S THIS FACTOR 1 homolog, chloroplastic
tae-r.2	123150966	protein WHAT'S THIS FACTOR 1 homolog, chloroplastic
hvu-r.1	123408643	protein WHAT'S THIS FACTOR 1 homolog, chloroplastic
sbi-r.1	8073178	protein ROOT PRIMORDIUM DEFECTIVE 1
bdi-r.1	100827622	protein WHAT'S THIS FACTOR 1 homolog

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0003723 [list] [network] RNA binding

(1400 genes)

IEA

Protein

XP_003589162.1 [sequence] [blastp]
XP_024631111.1 [sequence] [blastp]
XP_024631114.1 [sequence] [blastp]
XP_024631115.1 [sequence] [blastp]
XP_039688683.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, mito 4, nucl 1, cyto 1, pero 1, cyto_nucl 1, cyto_pero 1	(predict for XP_003589162.1)
chlo 4, mito 4, nucl 1, cyto 1, pero 1, cyto_nucl 1, cyto_pero 1	(predict for XP_024631111.1)
chlo 4, mito 4, nucl 1, cyto 1, pero 1, cyto_nucl 1, cyto_pero 1	(predict for XP_024631114.1)
chlo 4, mito 4, nucl 1, cyto 1, pero 1, cyto_nucl 1, cyto_pero 1	(predict for XP_024631115.1)
chlo 4, mito 4, nucl 1, cyto 1, pero 1, cyto_nucl 1, cyto_pero 1	(predict for XP_039688683.1)

Subcellular
localization
TargetP

other 5, mito 5	(predict for XP_003589162.1)
other 5, mito 5	(predict for XP_024631111.1)
other 5, mito 5	(predict for XP_024631114.1)
other 5, mito 5	(predict for XP_024631115.1)
other 5, mito 5	(predict for XP_039688683.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	mtr-u.5 for 11413051	mtr-r.5 for 11413051	mtr-u.5 for 11445827	mtr-u.5 for 11438267	mtr-u.5 for 11417849	gma-u.5 for 100814115	ppo-u.5 for 7492463	ath-u.5 for AT2G31290	bra-r.6 for 103868268	vvi-u.5 for 100253756	ghi-r.1 for 107951623	bna-r.1 for 106381487	bna-r.1 for 106425464	cit-r.1 for 102610559	sly-u.5 for 101265230	sot-r.1 for 102590253	nta-r.1 for 107816837	nta-r.1 for 107763120	osa-u.5 for 4340709	zma-u.5 for 100278528	tae-r.2 for 123170334	tae-r.2 for 123159218	tae-r.2 for 123150966	hvu-r.1 for 123408643	sbi-r.1 for 8073178	bdi-r.1 for 100827622

Ortholog

Ortholog ID: 10014

Species

mtr

gma

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*