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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   100278950   transcription initiation factor TFIID subunit 4b 
 zma-r.6   100278950   transcription initiation factor TFIID subunit 4b 
 osa-u.5   4333214   transcription initiation factor TFIID subunit 4b 
 ath-u.5   TAF4   TBP-associated factor 4 
 gma-u.5   100798514   transcription initiation factor TFIID subunit 4b 
 gma-u.5   100797127   transcription initiation factor TFIID subunit 4b 
 gma-u.5   100795389   transcription initiation factor TFIID subunit 4b 
 sly-u.5   101262209   transcription initiation factor TFIID subunit 4b 
 vvi-u.5   100252311   transcription initiation factor TFIID subunit 4b 
 ppo-u.5   7462851   transcription initiation factor TFIID subunit 4b 
 ppo-u.5   7497338   transcription initiation factor TFIID subunit 4b 
 mtr-u.5   25489951   uncharacterized LOC25489951 
 mtr-u.5   25489943   transcription initiation factor TFIID subunit 4b 

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Top 50 coexpressed genes to 100278950 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100278950 (zma-u.5 coexpression data)

CoexMap"100278950"


zmaLOC100278950 | Entrez gene ID : 100278950      
Species zma osa ath gma sly vvi ppo mtr bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 2 1 1 3 1 1 2 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG zma03022 [list] [network] Basal transcription factors (55 genes)
GO BP
GO:0006367 [list] [network] transcription initiation at RNA polymerase II promoter  (44 genes)  IEA  
GO CC
GO:0005669 [list] [network] transcription factor TFIID complex  (28 genes)  IEA  
GO MF
GO:0016251 [list] [network] RNA polymerase II general transcription initiation factor activity  (27 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (2288 genes)  IEA  
Protein XP_008657328.1 [sequence] [blastp]
XP_008657332.1 [sequence] [blastp]
XP_008657338.1 [sequence] [blastp]
XP_008657351.1 [sequence] [blastp]
XP_020401999.1 [sequence] [blastp]
XP_020402000.1 [sequence] [blastp]
XP_035819925.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_008657328.1)
nucl 10  (predict for XP_008657332.1)
nucl 10  (predict for XP_008657338.1)
nucl 9,  cyto_nucl 5  (predict for XP_008657351.1)
nucl 10  (predict for XP_020401999.1)
nucl 10  (predict for XP_020402000.1)
nucl 9,  cyto_nucl 5  (predict for XP_035819925.1)
Subcellular
localization
TargetP
other 9  (predict for XP_008657328.1)
other 9  (predict for XP_008657332.1)
other 9  (predict for XP_008657338.1)
other 7,  chlo 4  (predict for XP_008657351.1)
other 9  (predict for XP_020401999.1)
other 9  (predict for XP_020402000.1)
other 7,  chlo 4  (predict for XP_035819925.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
100278950
zma-r.6
for
100278950
osa-u.5
for
4333214
ath-u.5
for
TAF4
gma-u.5
for
100798514
gma-u.5
for
100797127
gma-u.5
for
100795389
sly-u.5
for
101262209
vvi-u.5
for
100252311
ppo-u.5
for
7462851
ppo-u.5
for
7497338
mtr-u.5
for
25489951
mtr-u.5
for
25489943


Ortholog ID: 5386
Species zma sbi osa tae tae hvu bdi ath gma gma sly bra bra vvi ppo ppo mtr ghi ghi bna bna sot sot cit nta nta
Symbol LOC100278950 LOC8063215 LOC4333214 LOC123097368 LOC123086110 LOC123448440 LOC100829985 TAF4 LOC100798514 LOC100797127 LOC101262209 LOC103827992 LOC103848801 LOC100252311 LOC7497338 LOC7462851 LOC25489943 LOC107941920 LOC107892395 LOC106371586 LOC106358409 LOC102579610 LOC102603242 LOC102619964 LOC107766026 LOC107765591
Function* transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b-like transcription initiation factor TFIID subunit 4b TBP-associated factor 4 transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b-like transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b-like transcription initiation factor TFIID subunit 4b
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 3
tae03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03022 Basal transcription factors 3
tae03013 Nucleocytoplasmic transport 3
tae03250 Viral life cycle - HIV-1 3
tae03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
bdi03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03022 Basal transcription factors 2
sly04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 4
ppo03040 Spliceosome 2
ppo03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 3
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03018 RNA degradation 2
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
ghi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 4
bna03420 Nucleotide excision repair 2
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
sot03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03082 ATP-dependent chromatin remodeling 2
cit03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta03022 Basal transcription factors 2
nta03008 Ribosome biogenesis in eukaryotes 2
nta04712 Circadian rhythm - plant 2
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta03022 Basal transcription factors 2
nta03008 Ribosome biogenesis in eukaryotes 2
nta04712 Circadian rhythm - plant 2
nta03082 ATP-dependent chromatin remodeling 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100278950 8063215 4333214 123097368 123086110 123448440 100829985 834330 100798514 100797127 101262209 103827992 103848801 100252311 7497338 7462851 25489943 107941920 107892395 106371586 106358409 102579610 102603242 102619964 107766026 107765591
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