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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106371586   transcription initiation factor TFIID subunit 4b 
 bna-r.1   106410203   transcription initiation factor TFIID subunit 4b-like 
 bna-r.1   106358409   transcription initiation factor TFIID subunit 4b 
 bna-r.1   106349546   transcription initiation factor TFIID subunit 4b 
 bra-r.6   103827992   transcription initiation factor TFIID subunit 4b 
 bra-r.6   103848801   transcription initiation factor TFIID subunit 4b 
 ath-u.5   TAF4   TBP-associated factor 4 
 ghi-r.1   107892395   transcription initiation factor TFIID subunit 4b 
 ghi-r.1   107905215   transcription initiation factor TFIID subunit 4b 
 ghi-r.1   107941920   transcription initiation factor TFIID subunit 4b 
 cit-r.1   102619964   transcription initiation factor TFIID subunit 4b 
 gma-u.5   100798514   transcription initiation factor TFIID subunit 4b 
 gma-u.5   100797127   transcription initiation factor TFIID subunit 4b 
 gma-u.5   100795389   transcription initiation factor TFIID subunit 4b 
 vvi-u.5   100252311   transcription initiation factor TFIID subunit 4b 
 ppo-u.5   7462851   transcription initiation factor TFIID subunit 4b 
 ppo-u.5   7497338   transcription initiation factor TFIID subunit 4b 
 mtr-u.5   25489943   transcription initiation factor TFIID subunit 4b 
 sly-u.5   101262209   transcription initiation factor TFIID subunit 4b 
 sot-r.1   102579610   transcription initiation factor TFIID subunit 4b-like 
 sot-r.1   102603242   transcription initiation factor TFIID subunit 4b 
 nta-r.1   107829196   transcription initiation factor TFIID subunit 4b 
 nta-r.1   107766026   transcription initiation factor TFIID subunit 4b-like 
 nta-r.1   107765591   transcription initiation factor TFIID subunit 4b 
 osa-u.5   4333214   transcription initiation factor TFIID subunit 4b 
 zma-u.5   100278950   transcription initiation factor TFIID subunit 4b 
 tae-r.2   123172056   transcription initiation factor TFIID subunit 4b 
 tae-r.2   123097368   transcription initiation factor TFIID subunit 4b 
 tae-r.2   123086110   transcription initiation factor TFIID subunit 4b 
 hvu-r.1   123448440   transcription initiation factor TFIID subunit 4b-like 
 sbi-r.1   8063215   transcription initiation factor TFIID subunit 4b 
 bdi-r.1   100829985   transcription initiation factor TFIID subunit 4b 

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Top 50 coexpressed genes to 106371586 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106371586 (bna-r.1 coexpression data)

CoexMap"106371586"


bnaLOC106371586 | Entrez gene ID : 106371586    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 2 1 3 1 3 1 2 1 1 2 3 1 1 3 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03022 [list] [network] Basal transcription factors (161 genes)
GO BP
GO:0006367 [list] [network] transcription initiation at RNA polymerase II promoter  (114 genes)  IEA  
GO CC
GO:0005669 [list] [network] transcription factor TFIID complex  (56 genes)  IEA  
GO MF
GO:0016251 [list] [network] RNA polymerase II general transcription initiation factor activity  (57 genes)  IEA  
GO:0046982 [list] [network] protein heterodimerization activity  (268 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (6522 genes)  IEA  
Protein XP_013667121.1 [sequence] [blastp]
XP_013667122.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for XP_013667121.1)
nucl 10  (predict for XP_013667122.1)
Subcellular
localization
TargetP
other 8  (predict for XP_013667121.1)
other 8  (predict for XP_013667122.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106371586
bna-r.1
for
106410203
bna-r.1
for
106358409
bna-r.1
for
106349546
bra-r.6
for
103827992
bra-r.6
for
103848801
ath-u.5
for
TAF4
ghi-r.1
for
107892395
ghi-r.1
for
107905215
ghi-r.1
for
107941920
cit-r.1
for
102619964
gma-u.5
for
100798514
gma-u.5
for
100797127
gma-u.5
for
100795389
vvi-u.5
for
100252311
ppo-u.5
for
7462851
ppo-u.5
for
7497338
mtr-u.5
for
25489943
sly-u.5
for
101262209
sot-r.1
for
102579610
sot-r.1
for
102603242
nta-r.1
for
107829196
nta-r.1
for
107766026
nta-r.1
for
107765591
osa-u.5
for
4333214
zma-u.5
for
100278950
tae-r.2
for
123172056
tae-r.2
for
123097368
tae-r.2
for
123086110
hvu-r.1
for
123448440
sbi-r.1
for
8063215
bdi-r.1
for
100829985


Ortholog ID: 5386
Species bna bna bna bra bra ath ghi ghi ghi cit gma gma gma vvi ppo ppo mtr mtr sly sot sot nta nta nta osa zma tae tae tae hvu sbi bdi
Symbol LOC106371586 LOC106410203 LOC106358409 LOC103827992 LOC103848801 TAF4 LOC107892395 LOC107905215 LOC107941920 LOC102619964 LOC100798514 LOC100797127 LOC100783067 LOC100252311 LOC7462851 LOC7497338 LOC25489943 LOC25489951 LOC101262209 LOC102579610 LOC102603242 LOC107829196 LOC107766026 LOC107765591 LOC4333214 LOC100278950 LOC123172056 LOC123097368 LOC123086110 LOC123448440 LOC8063215 LOC100829985
Function* transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b-like transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b TBP-associated factor 4 transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b uncharacterized LOC25489951 transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b-like transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b-like transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b-like transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 4
bna03420 Nucleotide excision repair 2
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 4
bna03420 Nucleotide excision repair 2
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
ghi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03018 RNA degradation 2
ghi03022 Basal transcription factors 2
ghi03060 Protein export 2
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03018 RNA degradation 2
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03082 ATP-dependent chromatin remodeling 2
cit03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 2
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 4
ppo03040 Spliceosome 2
ppo03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 3
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03022 Basal transcription factors 2
sly04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
sot03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta03022 Basal transcription factors 2
nta03008 Ribosome biogenesis in eukaryotes 2
nta04712 Circadian rhythm - plant 2
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta03022 Basal transcription factors 2
nta03008 Ribosome biogenesis in eukaryotes 2
nta04712 Circadian rhythm - plant 2
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 4
tae03082 ATP-dependent chromatin remodeling 3
tae03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 3
tae03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03022 Basal transcription factors 3
tae03013 Nucleocytoplasmic transport 3
tae03250 Viral life cycle - HIV-1 3
tae03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
bdi03013 Nucleocytoplasmic transport 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106371586 106410203 106358409 103827992 103848801 834330 107892395 107905215 107941920 102619964 100798514 100797127 100783067 100252311 7462851 7497338 25489943 25489951 101262209 102579610 102603242 107829196 107766026 107765591 4333214 100278950 123172056 123097368 123086110 123448440 8063215 100829985
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