ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
zma-u.5	100281078	arogenate dehydrogenase
zma-r.6	100281078	arogenate dehydrogenase
zma-u.5	100284089	arogenate dehydrogenase
zma-u.5	100281038	arogenate dehydrogenase
zma-u.5	100276497	uncharacterized LOC100276497
osa-u.5	107277437	arogenate dehydrogenase 2, chloroplastic
osa-u.5	4342026	arogenate dehydrogenase 2, chloroplastic
osa-u.5	4341232	arogenate dehydrogenase 2, chloroplastic
ath-u.5	AT5G34930	arogenate dehydrogenase
ath-u.5	AT1G15710	prephenate dehydrogenase family protein
gma-u.5	PDH1	prephenate dehydrogenase 1
gma-u.5	ADH1	arogenate dehydrogenase 1, chloroplastic-like
gma-u.5	TYRA-A	arogenate dehydrogenase 2
sly-u.5	101264432	arogenate dehydrogenase 1, chloroplastic
sly-u.5	101259361	arogenate dehydrogenase 2, chloroplastic-like
sly-u.5	101259263	arogenate dehydrogenase 2, chloroplastic
vvi-u.5	104877397	arogenate dehydrogenase 2, chloroplastic
ppo-u.5	7472451	arogenate dehydrogenase 1, chloroplastic
ppo-u.5	18094861	arogenate dehydrogenase 2, chloroplastic
ppo-u.5	18099902	arogenate dehydrogenase 1, chloroplastic
mtr-u.5	11445490	arogenate dehydrogenase 1, chloroplastic
mtr-u.5	11423073	arogenate dehydrogenase 1, chloroplastic
mtr-u.5	11415867	arogenate dehydrogenase 1, chloroplastic

Top 50 coexpressed genes to 100281078 (zma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100281078 (zma-u.5 coexpression data)

CoexMap"100281078"

[Cytoscape]

Annotation

functional annotation

KEGG

zma00400 [list] [network] Phenylalanine, tyrosine and tryptophan biosynthesis (59 genes)

zma01230 [list] [network] Biosynthesis of amino acids (293 genes)

GO BP

GO:0006571 [list] [network] L-tyrosine biosynthetic process

(4 genes)

IEA

GO CC

GO MF

GO:0004665 [list] [network] prephenate dehydrogenase (NADP+) activity	(4 genes)	IEA
GO:0008977 [list] [network] prephenate dehydrogenase (NAD+) activity	(4 genes)	IEA
GO:0033730 [list] [network] arogenate dehydrogenase (NADP+) activity	(4 genes)	IEA

Protein

NP_001147469.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 8, mito 2

(predict for NP_001147469.1)

Subcellular
localization
TargetP

mito 7, chlo 3

(predict for NP_001147469.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 100281078	zma-r.6 for 100281078	zma-u.5 for 100284089	zma-u.5 for 100281038	zma-u.5 for 100276497	osa-u.5 for 107277437	osa-u.5 for 4342026	osa-u.5 for 4341232	ath-u.5 for AT5G34930	ath-u.5 for AT1G15710	gma-u.5 for PDH1	gma-u.5 for ADH1	gma-u.5 for TYRA-A	sly-u.5 for 101264432	sly-u.5 for 101259361	sly-u.5 for 101259263	vvi-u.5 for 104877397	ppo-u.5 for 7472451	ppo-u.5 for 18094861	ppo-u.5 for 18099902	mtr-u.5 for 11445490	mtr-u.5 for 11423073	mtr-u.5 for 11415867

Ortholog

Ortholog ID: 1881

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

ADH1

TYRA-A

Function^*

uncharacterized LOC100276497

arogenate dehydrogenase

arogenate dehydrogenase 2, chloroplastic

arogenate dehydrogenase 2, chloroplastic-like

arogenate dehydrogenase 2, chloroplastic

arogenate dehydrogenase 2, chloroplastic-like

arogenate dehydrogenase

prephenate dehydrogenase family protein

arogenate dehydrogenase 1, chloroplastic-like

arogenate dehydrogenase 2

arogenate dehydrogenase 1, chloroplastic

arogenate dehydrogenase 2, chloroplastic-like

arogenate dehydrogenase 2, chloroplastic

arogenate dehydrogenase 1, chloroplastic

arogenate dehydrogenase 2, chloroplastic

arogenate dehydrogenase 1, chloroplastic

arogenate dehydrogenase 2, chloroplastic

arogenate dehydrogenase 1, chloroplastic

arogenate dehydrogenase 2, chloroplastic-like

arogenate dehydrogenase 2, chloroplastic

arogenate dehydrogenase 1, chloroplastic-like

arogenate dehydrogenase 2, chloroplastic-like

arogenate dehydrogenase 1, chloroplastic

arogenate dehydrogenase 2, chloroplastic

arogenate dehydrogenase 1, chloroplastic

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi01230	Biosynthesis of amino acids	13
sbi00400	Phenylalanine, tyrosine and tryptophan biosynthesis	9
sbi00940	Phenylpropanoid biosynthesis	3
sbi00670	One carbon pool by folate	3
sbi01240	Biosynthesis of cofactors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi01230	Biosynthesis of amino acids	7
sbi00670	One carbon pool by folate	3
sbi01240	Biosynthesis of cofactors	3
sbi00400	Phenylalanine, tyrosine and tryptophan biosynthesis	3
sbi00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa01230	Biosynthesis of amino acids	8
osa03050	Proteasome	6
osa00270	Cysteine and methionine metabolism	5
osa01200	Carbon metabolism	4
osa00260	Glycine, serine and threonine metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	6
tae03040	Spliceosome	3
tae00400	Phenylalanine, tyrosine and tryptophan biosynthesis	3
tae01230	Biosynthesis of amino acids	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2
tae01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00920	Sulfur metabolism	2
hvu01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi01230	Biosynthesis of amino acids	3
bdi00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath01230	Biosynthesis of amino acids	3
ath00564	Glycerophospholipid metabolism	2
ath00710	Carbon fixation by Calvin cycle	2
ath01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00620	Pyruvate metabolism	8
gma01200	Carbon metabolism	8
gma01230	Biosynthesis of amino acids	6
gma00010	Glycolysis / Gluconeogenesis	6
gma00061	Fatty acid biosynthesis	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma01230	Biosynthesis of amino acids	3
gma03082	ATP-dependent chromatin remodeling	2
gma00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2
gma00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04626	Plant-pathogen interaction	3
sly04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04016	MAPK signaling pathway - plant	2
sly04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra01230	Biosynthesis of amino acids	9
bra01200	Carbon metabolism	8
bra00710	Carbon fixation by Calvin cycle	7
bra00010	Glycolysis / Gluconeogenesis	4
bra00030	Pentose phosphate pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	4
ghi00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2
ghi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00400	Phenylalanine, tyrosine and tryptophan biosynthesis	3
bna01230	Biosynthesis of amino acids	3
bna00280	Valine, leucine and isoleucine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00400	Phenylalanine, tyrosine and tryptophan biosynthesis	3
bna01230	Biosynthesis of amino acids	3
bna00280	Valine, leucine and isoleucine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00360	Phenylalanine metabolism	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit01200	Carbon metabolism	9
cit00620	Pyruvate metabolism	8
cit00010	Glycolysis / Gluconeogenesis	6
cit01240	Biosynthesis of cofactors	6
cit00020	Citrate cycle (TCA cycle)	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00400	Phenylalanine, tyrosine and tryptophan biosynthesis	7
nta01230	Biosynthesis of amino acids	7
nta00270	Cysteine and methionine metabolism	4
nta00670	One carbon pool by folate	4
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04146	Peroxisome	2
nta00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2
nta01230	Biosynthesis of amino acids	2

Expression

Expression pattern

Entrez Gene ID^*

100276497

100284089

8064968

8064969

4342026

107277437

123163666

123169064

123408896

123407447

100829970

100828973

833436

838140

100801552

100803931

101264432

101259361

103842888

103858107

18094861

7472451

11415867

11423073

107906447

107901339

106414620

111200313

102605098

102587993

102624096

102607475

107813162

107764315

5720883

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Species	zma	osa	ath	gma	sly	vvi	ppo	mtr	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	5	3	2	3	3	1	3	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100281078 (zma-u.5 coexpression data)

Top 50 enrichment test to 100281078 (zma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**