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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   PDH1   prephenate dehydrogenase 1 
 gma-r.7   PDH1   prephenate dehydrogenase 1 
 gma-m.5   PDH1   prephenate dehydrogenase 1 
 gma-u.5   ADH1   arogenate dehydrogenase 1, chloroplastic-like 
 gma-u.5   TYRA-A   arogenate dehydrogenase 2 
 gma-u.5   PDH2   prephenate dehydrogenase 2 
 mtr-u.5   11445490   arogenate dehydrogenase 1, chloroplastic 
 mtr-u.5   11423073   arogenate dehydrogenase 1, chloroplastic 
 mtr-u.5   11415867   arogenate dehydrogenase 1, chloroplastic 
 ppo-u.5   7472451   arogenate dehydrogenase 1, chloroplastic 
 ppo-u.5   18094861   arogenate dehydrogenase 2, chloroplastic 
 ppo-u.5   18099902   arogenate dehydrogenase 1, chloroplastic 
 ath-u.5   AT5G34930   arogenate dehydrogenase 
 ath-u.5   AT1G15710   prephenate dehydrogenase family protein 
 bra-r.6   103842888   arogenate dehydrogenase 2, chloroplastic 
 bra-r.6   103858107   arogenate dehydrogenase 1, chloroplastic 
 vvi-u.5   104877397   arogenate dehydrogenase 2, chloroplastic 
 ghi-r.1   107906447   arogenate dehydrogenase 2, chloroplastic 
 ghi-r.1   107962573   arogenate dehydrogenase 1, chloroplastic 
 ghi-r.1   107901339   arogenate dehydrogenase 1, chloroplastic 
 bna-r.1   111200313   arogenate dehydrogenase 2, chloroplastic 
 bna-r.1   125591290   arogenate dehydrogenase 2, chloroplastic-like 
 bna-r.1   125584331   arogenate dehydrogenase 1, chloroplastic-like 
 cit-r.1   102611864   arogenate dehydrogenase 1, chloroplastic 
 cit-r.1   102607475   arogenate dehydrogenase 1, chloroplastic 
 cit-r.1   102624096   arogenate dehydrogenase 2, chloroplastic-like 
 sly-u.5   101264432   arogenate dehydrogenase 1, chloroplastic 
 sly-u.5   101259361   arogenate dehydrogenase 2, chloroplastic-like 
 sly-u.5   101259263   arogenate dehydrogenase 2, chloroplastic 
 sot-r.1   102579802   arogenate dehydrogenase 2, chloroplastic-like 
 sot-r.1   102587993   arogenate dehydrogenase 2, chloroplastic-like 
 sot-r.1   102605098   arogenate dehydrogenase 1, chloroplastic-like 
 nta-r.1   107764315   arogenate dehydrogenase 1, chloroplastic 
 nta-r.1   107779931   arogenate dehydrogenase 1, chloroplastic 
 nta-r.1   107813162   arogenate dehydrogenase 2, chloroplastic 
 osa-u.5   107277437   arogenate dehydrogenase 2, chloroplastic 
 osa-u.5   4342026   arogenate dehydrogenase 2, chloroplastic 
 osa-u.5   4341232   arogenate dehydrogenase 2, chloroplastic 
 zma-u.5   100284089   arogenate dehydrogenase 
 zma-u.5   100281078   arogenate dehydrogenase 
 zma-u.5   100281038   arogenate dehydrogenase 
 tae-r.2   123148532   arogenate dehydrogenase 2, chloroplastic 
 tae-r.2   123160230   arogenate dehydrogenase 2, chloroplastic 
 hvu-r.1   123408896   arogenate dehydrogenase 2, chloroplastic-like 
 hvu-r.1   123407447   arogenate dehydrogenase 2, chloroplastic-like 
 sbi-r.1   8064968   arogenate dehydrogenase 2, chloroplastic 
 sbi-r.1   8064969   arogenate dehydrogenase 2, chloroplastic 
 sbi-r.1   8072682   arogenate dehydrogenase 2, chloroplastic 
 bdi-r.1   100828973   arogenate dehydrogenase 2, chloroplastic-like 
 bdi-r.1   100833753   arogenate dehydrogenase 2, chloroplastic 
 bdi-r.1   100829970   arogenate dehydrogenase 2, chloroplastic 
 cre-r.1   CHLRE_06g278350v5   uncharacterized protein 

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Top 50 coexpressed genes to PDH1 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PDH1 (gma-u.5 coexpression data)

CoexMap"100787362"


gmaPDH1 | Entrez gene ID : 100787362      
Species gma mtr ppo ath bra vvi ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 6 3 3 2 2 1 3 3 3 3 3 3 3 3 2 2 3 3 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx00400 [list] [network] Phenylalanine, tyrosine and tryptophan biosynthesis (70 genes)
gmx01230 [list] [network] Biosynthesis of amino acids (403 genes)
GO BP
GO:0006571 [list] [network] L-tyrosine biosynthetic process  (5 genes)  IEA  
GO CC
GO MF
GO:0004665 [list] [network] prephenate dehydrogenase (NADP+) activity  (4 genes)  IEA  
GO:0008977 [list] [network] prephenate dehydrogenase (NAD+) activity  (4 genes)  IEA  
GO:0033730 [list] [network] arogenate dehydrogenase (NADP+) activity  (5 genes)  IEA  
GO:0070403 [list] [network] NAD+ binding  (30 genes)  IEA  
Protein NP_001304525.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  extr 2,  cyto 1  (predict for NP_001304525.1)
Subcellular
localization
TargetP
other 4  (predict for NP_001304525.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
PDH1
gma-r.7
for
PDH1
gma-m.5
for
PDH1
gma-u.5
for
ADH1
gma-u.5
for
TYRA-A
gma-u.5
for
PDH2
mtr-u.5
for
11445490
mtr-u.5
for
11423073
mtr-u.5
for
11415867
ppo-u.5
for
7472451
ppo-u.5
for
18094861
ppo-u.5
for
18099902
ath-u.5
for
AT5G34930
ath-u.5
for
AT1G15710
bra-r.6
for
103842888
bra-r.6
for
103858107
vvi-u.5
for
104877397
ghi-r.1
for
107906447
ghi-r.1
for
107962573
ghi-r.1
for
107901339
bna-r.1
for
111200313
bna-r.1
for
125591290
bna-r.1
for
125584331
cit-r.1
for
102611864
cit-r.1
for
102607475
cit-r.1
for
102624096
sly-u.5
for
101264432
sly-u.5
for
101259361
sly-u.5
for
101259263
sot-r.1
for
102579802
sot-r.1
for
102587993
sot-r.1
for
102605098
nta-r.1
for
107764315
nta-r.1
for
107779931
nta-r.1
for
107813162
osa-u.5
for
107277437
osa-u.5
for
4342026
osa-u.5
for
4341232
zma-u.5
for
100284089
zma-u.5
for
100281078
zma-u.5
for
100281038
tae-r.2
for
123148532
tae-r.2
for
123160230
hvu-r.1
for
123408896
hvu-r.1
for
123407447
sbi-r.1
for
8064968
sbi-r.1
for
8064969
sbi-r.1
for
8072682
bdi-r.1
for
100828973
bdi-r.1
for
100833753
bdi-r.1
for
100829970
cre-r.1
for
CHLRE_06g278350v5


Ortholog ID: 1881
Species gma gma gma mtr mtr mtr ppo ppo ppo ath ath bra bra ghi ghi ghi bna bna bna cit cit cit sly sly sly sot sot sot nta nta nta osa osa osa zma zma zma tae tae tae hvu hvu sbi sbi sbi bdi bdi bdi cre
Symbol ADH1 TYRA-A PDH2 LOC11445490 LOC11423073 LOC11415867 LOC7472451 LOC18094861 LOC18099902 AT5G34930 AT1G15710 LOC103842888 LOC103858107 LOC107906447 LOC107901339 LOC107889341 LOC111200313 LOC106438203 LOC106414620 LOC102611864 LOC102607475 LOC102624096 LOC101264432 LOC101259361 LOC101259263 LOC102579802 LOC102587993 LOC102605098 LOC107764315 LOC107779931 LOC107813162 LOC107277437 LOC4342026 LOC4341232 LOC100284089 LOC100281038 LOC100276497 LOC123169064 LOC123163666 LOC123161907 LOC123408896 LOC123407447 LOC8064968 LOC8064969 LOC8072682 LOC100828973 LOC100833753 LOC100829970 CHLRE_06g278350v5
Function* arogenate dehydrogenase 1, chloroplastic-like arogenate dehydrogenase 2 prephenate dehydrogenase 2 arogenate dehydrogenase 1, chloroplastic arogenate dehydrogenase 1, chloroplastic arogenate dehydrogenase 1, chloroplastic arogenate dehydrogenase 1, chloroplastic arogenate dehydrogenase 2, chloroplastic arogenate dehydrogenase 1, chloroplastic arogenate dehydrogenase prephenate dehydrogenase family protein arogenate dehydrogenase 2, chloroplastic arogenate dehydrogenase 1, chloroplastic arogenate dehydrogenase 2, chloroplastic arogenate dehydrogenase 1, chloroplastic arogenate dehydrogenase 1, chloroplastic arogenate dehydrogenase 2, chloroplastic arogenate dehydrogenase 1, chloroplastic arogenate dehydrogenase 2, chloroplastic-like arogenate dehydrogenase 1, chloroplastic arogenate dehydrogenase 1, chloroplastic arogenate dehydrogenase 2, chloroplastic-like arogenate dehydrogenase 1, chloroplastic arogenate dehydrogenase 2, chloroplastic-like arogenate dehydrogenase 2, chloroplastic arogenate dehydrogenase 2, chloroplastic-like arogenate dehydrogenase 2, chloroplastic-like arogenate dehydrogenase 1, chloroplastic-like arogenate dehydrogenase 1, chloroplastic arogenate dehydrogenase 1, chloroplastic arogenate dehydrogenase 2, chloroplastic arogenate dehydrogenase 2, chloroplastic arogenate dehydrogenase 2, chloroplastic arogenate dehydrogenase 2, chloroplastic arogenate dehydrogenase arogenate dehydrogenase uncharacterized LOC100276497 arogenate dehydrogenase 2, chloroplastic arogenate dehydrogenase 2, chloroplastic arogenate dehydrogenase 2, chloroplastic arogenate dehydrogenase 2, chloroplastic-like arogenate dehydrogenase 2, chloroplastic-like arogenate dehydrogenase 2, chloroplastic arogenate dehydrogenase 2, chloroplastic arogenate dehydrogenase 2, chloroplastic arogenate dehydrogenase 2, chloroplastic-like arogenate dehydrogenase 2, chloroplastic arogenate dehydrogenase 2, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00620 Pyruvate metabolism 8
gma01200 Carbon metabolism 8
gma01230 Biosynthesis of amino acids 6
gma00010 Glycolysis / Gluconeogenesis 6
gma00061 Fatty acid biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01230 Biosynthesis of amino acids 3
gma03082 ATP-dependent chromatin remodeling 2
gma00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
gma00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
gma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 4
ppo00270 Cysteine and methionine metabolism 3
ppo00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 3
ath00564 Glycerophospholipid metabolism 2
ath00710 Carbon fixation by Calvin cycle 2
ath01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01230 Biosynthesis of amino acids 9
bra01200 Carbon metabolism 8
bra00710 Carbon fixation by Calvin cycle 7
bra00010 Glycolysis / Gluconeogenesis 4
bra00030 Pentose phosphate pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
bna01230 Biosynthesis of amino acids 3
bna00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
bna01230 Biosynthesis of amino acids 2
bna00600 Sphingolipid metabolism 2
bna04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
bna01230 Biosynthesis of amino acids 3
bna00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01230 Biosynthesis of amino acids 4
cit01240 Biosynthesis of cofactors 3
cit00270 Cysteine and methionine metabolism 2
cit00670 One carbon pool by folate 2
cit00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 9
cit00620 Pyruvate metabolism 8
cit00010 Glycolysis / Gluconeogenesis 6
cit01240 Biosynthesis of cofactors 6
cit00020 Citrate cycle (TCA cycle) 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04626 Plant-pathogen interaction 3
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04016 MAPK signaling pathway - plant 2
sly04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04016 MAPK signaling pathway - plant 2
sly04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01240 Biosynthesis of cofactors 3
sot00030 Pentose phosphate pathway 2
sot00480 Glutathione metabolism 2
sot01200 Carbon metabolism 2
sot00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00360 Phenylalanine metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04146 Peroxisome 2
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
nta01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04146 Peroxisome 2
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
nta01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 7
nta01230 Biosynthesis of amino acids 7
nta00270 Cysteine and methionine metabolism 4
nta00670 One carbon pool by folate 4
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01230 Biosynthesis of amino acids 8
osa03050 Proteasome 6
osa00270 Cysteine and methionine metabolism 5
osa01200 Carbon metabolism 4
osa00260 Glycine, serine and threonine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 14
zma00270 Cysteine and methionine metabolism 9
zma00670 One carbon pool by folate 5
zma01240 Biosynthesis of cofactors 5
zma00400 Phenylalanine, tyrosine and tryptophan biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
tae01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 6
tae03040 Spliceosome 3
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
tae01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
tae01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00920 Sulfur metabolism 2
hvu01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01230 Biosynthesis of amino acids 13
sbi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 9
sbi00940 Phenylpropanoid biosynthesis 3
sbi00670 One carbon pool by folate 3
sbi01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01230 Biosynthesis of amino acids 7
sbi00670 One carbon pool by folate 3
sbi01240 Biosynthesis of cofactors 3
sbi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
sbi00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01230 Biosynthesis of amino acids 3
bdi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 8
bdi01230 Biosynthesis of amino acids 3
bdi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100801552 100803931 100810896 11445490 11423073 11415867 7472451 18094861 18099902 833436 838140 103842888 103858107 107906447 107901339 107889341 111200313 106438203 106414620 102611864 102607475 102624096 101264432 101259361 101259263 102579802 102587993 102605098 107764315 107779931 107813162 107277437 4342026 4341232 100284089 100281038 100276497 123169064 123163666 123161907 123408896 123407447 8064968 8064969 8072682 100828973 100833753 100829970 5720883
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