ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
zma-u.5	100281993	uncharacterized LOC100281993
zma-r.6	100281993	uncharacterized LOC100281993
zma-m.5	100281993	uncharacterized LOC100281993
zma-u.5	100285775	protein binding protein
zma-u.5	103630690	E3 ubiquitin-protein ligase Arkadia
sbi-r.1	8063097	uncharacterized LOC8063097
sbi-r.1	8074552	uncharacterized LOC8074552
osa-u.5	4339524	uncharacterized LOC4339524
osa-u.5	9269271	uncharacterized LOC9269271
tae-r.2	123182924	E3 ubiquitin-protein ligase MBR2
tae-r.2	123061817	E3 ubiquitin-protein ligase MBR1
tae-r.2	123070510	potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4
hvu-r.1	123444164	potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4-like
hvu-r.1	123449190	uncharacterized LOC123449190
bdi-r.1	100839508	uncharacterized LOC100839508
bdi-r.1	100824389	uncharacterized LOC100824389
ath-u.5	AT1G17970	RING/U-box superfamily protein
ath-u.5	AT1G73760	RING/U-box superfamily protein
gma-u.5	100788837	uncharacterized LOC100788837
gma-u.5	100818517	uncharacterized LOC100818517
gma-u.5	100819907	uncharacterized LOC100819907
sly-u.5	101251666	uncharacterized LOC101251666
sly-u.5	101244847	ring finger domain-containing protein
bra-r.6	103830732	E3 ubiquitin-protein ligase MBR2
bra-r.6	103831852	E3 ubiquitin-protein ligase MBR1
bra-r.6	103835929	uncharacterized LOC103835929
vvi-u.5	100252628	uncharacterized LOC100252628
ppo-u.5	7475652	uncharacterized LOC7475652
ppo-u.5	7486755	uncharacterized LOC7486755
mtr-u.5	11411170	uncharacterized LOC11411170
mtr-u.5	11426047	uncharacterized LOC11426047
ghi-r.1	107888783	probable E3 ubiquitin-protein ligase RHG1A
ghi-r.1	107953336	uncharacterized LOC107953336
ghi-r.1	107891981	probable E3 ubiquitin-protein ligase RHG1A
bna-r.1	106430133	E3 ubiquitin-protein ligase MBR2-like
bna-r.1	BNAC08G17670D	uncharacterized BNAC08G17670D
bna-r.1	111207187	uncharacterized LOC111207187
sot-r.1	102601442	uncharacterized LOC102601442
cit-r.1	102630351	uncharacterized LOC102630351
nta-r.1	107789563	uncharacterized LOC107789563
nta-r.1	107793076	uncharacterized LOC107793076
nta-r.1	107825792	uncharacterized LOC107825792

Top 50 coexpressed genes to 100281993 (zma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100281993 (zma-u.5 coexpression data)

CoexMap"100281993"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0061630 [list] [network] ubiquitin protein ligase activity

(251 genes)

IEA

Protein

NP_001148380.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 8, cyto 1

(predict for NP_001148380.2)

Subcellular
localization
TargetP

chlo 3

(predict for NP_001148380.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 100281993	zma-r.6 for 100281993	zma-m.5 for 100281993	zma-u.5 for 100285775	zma-u.5 for 103630690	sbi-r.1 for 8063097	sbi-r.1 for 8074552	osa-u.5 for 4339524	osa-u.5 for 9269271	tae-r.2 for 123182924	tae-r.2 for 123061817	tae-r.2 for 123070510	hvu-r.1 for 123444164	hvu-r.1 for 123449190	bdi-r.1 for 100839508	bdi-r.1 for 100824389	ath-u.5 for AT1G17970	ath-u.5 for AT1G73760	gma-u.5 for 100788837	gma-u.5 for 100818517	gma-u.5 for 100819907	sly-u.5 for 101251666	sly-u.5 for 101244847	bra-r.6 for 103830732	bra-r.6 for 103831852	bra-r.6 for 103835929	vvi-u.5 for 100252628	ppo-u.5 for 7475652	ppo-u.5 for 7486755	mtr-u.5 for 11411170	mtr-u.5 for 11426047	ghi-r.1 for 107888783	ghi-r.1 for 107953336	ghi-r.1 for 107891981	bna-r.1 for 106430133	bna-r.1 for BNAC08G17670D	bna-r.1 for 111207187	sot-r.1 for 102601442	cit-r.1 for 102630351	nta-r.1 for 107789563	nta-r.1 for 107793076	nta-r.1 for 107825792

Ortholog

Ortholog ID: 3162

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

Function^*

uncharacterized LOC100281993

protein binding protein

E3 ubiquitin-protein ligase Arkadia

uncharacterized LOC8063097

uncharacterized LOC8074552

uncharacterized LOC4339524

uncharacterized LOC9269271

E3 ubiquitin-protein ligase MBR1

potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4

E3 ubiquitin-protein ligase MBR2

potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4-like

uncharacterized LOC123449190

uncharacterized LOC100839508

uncharacterized LOC100824389

RING/U-box superfamily protein

uncharacterized LOC100788837

uncharacterized LOC100818517

uncharacterized LOC100807785

uncharacterized LOC101251666

ring finger domain-containing protein

E3 ubiquitin-protein ligase MBR2

E3 ubiquitin-protein ligase MBR1

uncharacterized LOC103835929

uncharacterized LOC100245764

uncharacterized LOC7475652

uncharacterized LOC7486755

uncharacterized LOC11411170

uncharacterized LOC11426047

probable E3 ubiquitin-protein ligase RHG1A

uncharacterized LOC107926704

uncharacterized LOC111207187

E3 ubiquitin-protein ligase MBR2

E3 ubiquitin-protein ligase MBR1

uncharacterized LOC102601442

uncharacterized LOC102630351

uncharacterized LOC107793076

uncharacterized LOC107825792

uncharacterized LOC107826725

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	2
zma04141	Protein processing in endoplasmic reticulum	2
zma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	4
sbi00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00592	alpha-Linolenic acid metabolism	2
sbi00591	Linoleic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04712	Circadian rhythm - plant	2
ath00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04075	Plant hormone signal transduction	4
gma00270	Cysteine and methionine metabolism	3
gma00543	Exopolysaccharide biosynthesis	3
gma00920	Sulfur metabolism	3
gma01200	Carbon metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04016	MAPK signaling pathway - plant	2
gma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04136	Autophagy - other	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04016	MAPK signaling pathway - plant	2
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00190	Oxidative phosphorylation	3
bra04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00410	beta-Alanine metabolism	8
ghi00640	Propanoate metabolism	8
ghi00071	Fatty acid degradation	7
ghi01212	Fatty acid metabolism	7
ghi01200	Carbon metabolism	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00071	Fatty acid degradation	5
ghi00592	alpha-Linolenic acid metabolism	5
ghi01212	Fatty acid metabolism	5
ghi00410	beta-Alanine metabolism	4
ghi00640	Propanoate metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04814	Motor proteins	6
ghi04130	SNARE interactions in vesicular transport	4
ghi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	2
nta04712	Circadian rhythm - plant	2
nta00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00330	Arginine and proline metabolism	2
nta00360	Phenylalanine metabolism	2
nta00380	Tryptophan metabolism	2
nta04141	Protein processing in endoplasmic reticulum	2

Expression

Expression pattern

Entrez Gene ID^*

100281993

100285775

103630690

8063097

8074552

4339524

9269271

123061817

123070510

123078922

123444164

123449190

100839508

100824389

838377

843711

100788837

100818517

100807785

101251666

101244847

103830732

103831852

103835929

100245764

7475652

7486755

11411170

11426047

107888783

107891981

107926704

111207187

106382952

106354302

102601442

102630351

107793076

107825792

107826725

The preparation time of this page was 0.2 [sec].


Species	zma	sbi	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	5	2	2	3	2	2	2	3	2	3	1	2	2	3	3	1	1	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100281993 (zma-u.5 coexpression data)

Top 50 enrichment test to 100281993 (zma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**