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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   100283773   Pseudouridine synthase family protein 
 zma-r.6   100283773   Pseudouridine synthase family protein 
 zma-m.5   100283773   Pseudouridine synthase family protein 
 osa-u.5   4330262   uncharacterized LOC4330262 
 ath-u.5   AT1G20370   Pseudouridine synthase family protein 
 ath-u.5   AT1G76120   Pseudouridine synthase family protein 
 gma-u.5   100811976   tRNA pseudouridine synthase A 
 gma-u.5   100778978   tRNA pseudouridine synthase A 
 sly-u.5   101250299   uncharacterized LOC101250299 
 vvi-u.5   100267766   uncharacterized LOC100267766 
 ppo-u.5   7490609   uncharacterized LOC7490609 
 ppo-u.5   7485628   uncharacterized LOC7485628 
 mtr-u.5   11442694   tRNA pseudouridine synthase A 
 mtr-u.5   11440088   tRNA pseudouridine synthase A 

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Top 50 coexpressed genes to 100283773 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100283773 (zma-u.5 coexpression data)

CoexMap"100283773"


zmaLOC100283773 | Entrez gene ID : 100283773      
Species zma osa ath gma sly vvi ppo mtr bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 3 1 2 2 1 1 2 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0031119 [list] [network] tRNA pseudouridine synthesis  (7 genes)  IEA  
GO:1990481 [list] [network] mRNA pseudouridine synthesis  (7 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (3371 genes)  IEA  
GO MF
GO:0009982 [list] [network] pseudouridine synthase activity  (21 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1549 genes)  IEA  
Protein NP_001150144.2 [sequence] [blastp]
XP_008643761.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  chlo 3,  mito 1,  cysk 1,  golg 1,  cyto_mito 1,  mito_plas 1  (predict for NP_001150144.2)
nucl 4,  chlo 3,  mito 1,  cysk 1,  golg 1,  cyto_mito 1,  mito_plas 1  (predict for XP_008643761.1)
Subcellular
localization
TargetP
chlo 7  (predict for NP_001150144.2)
chlo 7  (predict for XP_008643761.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
100283773
zma-r.6
for
100283773
zma-m.5
for
100283773
osa-u.5
for
4330262
ath-u.5
for
AT1G20370
ath-u.5
for
AT1G76120
gma-u.5
for
100811976
gma-u.5
for
100778978
sly-u.5
for
101250299
vvi-u.5
for
100267766
ppo-u.5
for
7490609
ppo-u.5
for
7485628
mtr-u.5
for
11442694
mtr-u.5
for
11440088


Ortholog ID: 7809
Species zma sbi osa tae tae hvu bdi ath ath gma gma sly bra vvi ppo ppo mtr mtr ghi ghi bna bna sot cit nta cre
Symbol LOC100283773 LOC8076052 LOC4330262 LOC123145056 LOC123137671 LOC123401341 LOC100834201 AT1G76120 AT1G20370 LOC100811976 LOC100778978 LOC101250299 LOC103832059 LOC100267766 LOC7490609 LOC7485628 LOC11442694 LOC11440088 LOC121218597 LOC107939533 LOC106421675 LOC106433713 LOC102585116 LOC102626088 LOC107780205 CHLRE_06g292450v5
Function* Pseudouridine synthase family protein tRNA pseudouridine synthase A, mitochondrial uncharacterized LOC4330262 tRNA pseudouridine synthase A tRNA pseudouridine synthase A tRNA pseudouridine synthase A-like tRNA pseudouridine synthase A Pseudouridine synthase family protein Pseudouridine synthase family protein tRNA pseudouridine synthase A tRNA pseudouridine synthase A uncharacterized LOC101250299 tRNA pseudouridine synthase 1 uncharacterized LOC100267766 uncharacterized LOC7490609 uncharacterized LOC7485628 tRNA pseudouridine synthase A tRNA pseudouridine synthase A tRNA pseudouridine synthase A tRNA pseudouridine synthase A pseudouridylate synthase 1 homolog pseudouridylate synthase 1 homolog tRNA pseudouridine synthase A, mitochondrial uncharacterized LOC102626088 uncharacterized LOC107780205 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 6
zma04075 Plant hormone signal transduction 2
zma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 2
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 2
gma03013 Nucleocytoplasmic transport 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03013 Nucleocytoplasmic transport 2
sot03008 Ribosome biogenesis in eukaryotes 2
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 11
cit03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100283773 8076052 4330262 123145056 123137671 123401341 100834201 843944 838625 100811976 100778978 101250299 103832059 100267766 7490609 7485628 11442694 11440088 121218597 107939533 106421675 106433713 102585116 102626088 107780205 66053815
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