ATTED-II : GeneCoexpression result

Species	Gene	Description
ppo-u.5	7485628	uncharacterized LOC7485628
ppo-r.4	7485628	uncharacterized LOC7485628
ppo-u.5	7490609	uncharacterized LOC7490609
gma-u.5	100811976	tRNA pseudouridine synthase A
gma-u.5	100778978	tRNA pseudouridine synthase A
mtr-u.5	11442694	tRNA pseudouridine synthase A
mtr-u.5	11440088	tRNA pseudouridine synthase A
ath-u.5	AT1G20370	Pseudouridine synthase family protein
ath-u.5	AT1G76120	Pseudouridine synthase family protein
vvi-u.5	100267766	uncharacterized LOC100267766
sly-u.5	101250299	uncharacterized LOC101250299
osa-u.5	4330262	uncharacterized LOC4330262
zma-u.5	100283773	Pseudouridine synthase family protein

functional annotation

KEGG

GO BP

GO:1990481 [list] [network] mRNA pseudouridine synthesis	(8 genes)	IEA
GO:0031119 [list] [network] tRNA pseudouridine synthesis	(9 genes)	IEA

GO CC

GO:0005634 [list] [network] nucleus

(3662 genes)

IEA

GO MF

GO:0009982 [list] [network] pseudouridine synthase activity	(21 genes)	IEA
GO:0003723 [list] [network] RNA binding	(1480 genes)	IEA

Protein

XP_024456139.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9, cyto 1

(predict for XP_024456139.2)

Subcellular
localization
TargetP

other 8

(predict for XP_024456139.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 7485628	ppo-r.4 for 7485628	ppo-u.5 for 7490609	gma-u.5 for 100811976	gma-u.5 for 100778978	mtr-u.5 for 11442694	mtr-u.5 for 11440088	ath-u.5 for AT1G20370	ath-u.5 for AT1G76120	vvi-u.5 for 100267766	sly-u.5 for 101250299	osa-u.5 for 4330262	zma-u.5 for 100283773

Ortholog ID: 7809

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

uncharacterized LOC7490609

uncharacterized LOC7485628

tRNA pseudouridine synthase A

Pseudouridine synthase family protein

tRNA pseudouridine synthase 1

uncharacterized LOC100267766

tRNA pseudouridine synthase A

pseudouridylate synthase 1 homolog

uncharacterized LOC102626088

uncharacterized LOC101250299

tRNA pseudouridine synthase A, mitochondrial

uncharacterized LOC107780205

uncharacterized LOC4330262

Pseudouridine synthase family protein

tRNA pseudouridine synthase A

tRNA pseudouridine synthase A-like

tRNA pseudouridine synthase A, mitochondrial

tRNA pseudouridine synthase A

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	2
gma03013	Nucleocytoplasmic transport	2
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	11
cit03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03013	Nucleocytoplasmic transport	2
sot03008	Ribosome biogenesis in eukaryotes	2
sot03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	6
zma04075	Plant hormone signal transduction	2
zma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	2
hvu03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	4

Expression

Expression pattern

Entrez Gene ID^*

7490609

7485628

100811976

100778978

11442694

11440088

843944

838625

103832059

100267766

121218597

107939533

106421675

106433713

102626088

101250299

102585116

107780205

4330262

100283773

123145056

123137671

123401341

8076052

100834201

66053815

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 7485628 (ppo-u.5 coexpression data)

Top 50 enrichment test to 7485628 (ppo-u.5 coexpression data)


Species	ppo	gma	mtr	ath	vvi	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	3	2	2	2	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 7485628 (ppo-u.5 coexpression data)

Top 50 enrichment test to 7485628 (ppo-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**