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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   100304335   uncharacterized LOC100304335 
 zma-r.6   100304335   uncharacterized LOC100304335 
 zma-m.5   100304335   uncharacterized LOC100304335 
 sbi-r.1   8070310   protein ROOT PRIMORDIUM DEFECTIVE 1 
 osa-u.5   4326712   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 tae-r.2   123189684   protein WHAT'S THIS FACTOR 1, chloroplastic 
 tae-r.2   123053812   protein WHAT'S THIS FACTOR 1, chloroplastic 
 tae-r.2   123045947   protein WHAT'S THIS FACTOR 1, chloroplastic 
 hvu-r.1   123427164   protein WHAT'S THIS FACTOR 1, chloroplastic 
 bdi-r.1   100826128   protein WHAT'S THIS FACTOR 1 homolog 
 ath-u.5   AT3G63090   Ubiquitin carboxyl-terminal hydrolase family protein 
 gma-u.5   100778092   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 sly-u.5   101252024   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 bra-r.6   103842112   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 vvi-u.5   100256232   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 ppo-u.5   7458248   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 mtr-u.5   25482543   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 mtr-u.5   11425067   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 ghi-r.1   107955249   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 ghi-r.1   107954686   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 bna-r.1   106411594   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 bna-r.1   106375239   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 sot-r.1   102579661   protein ROOT PRIMORDIUM DEFECTIVE 1 
 cit-r.1   102623745   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 nta-r.1   107781859   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic-like 
 nta-r.1   107785131   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 

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Top 50 coexpressed genes to 100304335 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100304335 (zma-u.5 coexpression data)

CoexMap"100304335"


zmaLOC100304335 | Entrez gene ID : 100304335      
Species zma sbi osa tae hvu bdi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 3 1 1 3 1 1 1 1 1 1 1 1 2 2 2 1 1 2 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (1549 genes)  IEA  
Protein NP_001353675.1 [sequence] [blastp]
XP_008668225.1 [sequence] [blastp]
XP_035820765.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for NP_001353675.1)
chlo 9  (predict for XP_008668225.1)
chlo 9  (predict for XP_035820765.1)
Subcellular
localization
TargetP
mito 4  (predict for NP_001353675.1)
mito 4  (predict for XP_008668225.1)
mito 4  (predict for XP_035820765.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
100304335
zma-r.6
for
100304335
zma-m.5
for
100304335
sbi-r.1
for
8070310
osa-u.5
for
4326712
tae-r.2
for
123189684
tae-r.2
for
123053812
tae-r.2
for
123045947
hvu-r.1
for
123427164
bdi-r.1
for
100826128
ath-u.5
for
AT3G63090
gma-u.5
for
100778092
sly-u.5
for
101252024
bra-r.6
for
103842112
vvi-u.5
for
100256232
ppo-u.5
for
7458248
mtr-u.5
for
25482543
mtr-u.5
for
11425067
ghi-r.1
for
107955249
ghi-r.1
for
107954686
bna-r.1
for
106411594
bna-r.1
for
106375239
sot-r.1
for
102579661
cit-r.1
for
102623745
nta-r.1
for
107781859
nta-r.1
for
107785131


Ortholog ID: 10840
Species zma sbi osa tae tae tae hvu bdi ath gma sly bra vvi ppo mtr mtr ghi ghi bna bna sot cit nta nta
Symbol LOC100304335 LOC8070310 LOC4326712 LOC123189684 LOC123053812 LOC123045947 LOC123427164 LOC100826128 AT3G63090 LOC100778092 LOC101252024 LOC103842112 LOC100256232 LOC7458248 LOC25482543 LOC11425067 LOC107955249 LOC107954686 LOC106411594 LOC106375239 LOC102579661 LOC102623745 LOC107781859 LOC107785131
Function* uncharacterized LOC100304335 protein ROOT PRIMORDIUM DEFECTIVE 1 protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1, chloroplastic protein WHAT'S THIS FACTOR 1, chloroplastic protein WHAT'S THIS FACTOR 1, chloroplastic protein WHAT'S THIS FACTOR 1, chloroplastic protein WHAT'S THIS FACTOR 1 homolog Ubiquitin carboxyl-terminal hydrolase family protein protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein ROOT PRIMORDIUM DEFECTIVE 1 protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic-like protein WHAT'S THIS FACTOR 1 homolog, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 4
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03082 ATP-dependent chromatin remodeling 2
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100304335 8070310 4326712 123189684 123053812 123045947 123427164 100826128 825484 100778092 101252024 103842112 100256232 7458248 25482543 11425067 107955249 107954686 106411594 106375239 102579661 102623745 107781859 107785131
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