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Orthologous genes in OrthoFinder**

Species Gene Description
 sot-r.1   102579661   protein ROOT PRIMORDIUM DEFECTIVE 1 
 sly-u.5   101252024   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 nta-r.1   107785131   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 nta-r.1   107781859   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic-like 
 ath-u.5   AT3G63090   Ubiquitin carboxyl-terminal hydrolase family protein 
 gma-u.5   100778092   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 bra-r.6   103842112   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 vvi-u.5   100256232   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 ppo-u.5   7458248   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 mtr-u.5   25482543   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 mtr-u.5   11425067   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 ghi-r.1   107955249   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 ghi-r.1   107954686   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 bna-r.1   106375239   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 bna-r.1   106411594   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 cit-r.1   102623745   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 osa-u.5   4326712   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 zma-u.5   100304335   uncharacterized LOC100304335 
 tae-r.2   123189684   protein WHAT'S THIS FACTOR 1, chloroplastic 
 tae-r.2   123053812   protein WHAT'S THIS FACTOR 1, chloroplastic 
 tae-r.2   123045947   protein WHAT'S THIS FACTOR 1, chloroplastic 
 hvu-r.1   123427164   protein WHAT'S THIS FACTOR 1, chloroplastic 
 sbi-r.1   8070310   protein ROOT PRIMORDIUM DEFECTIVE 1 
 bdi-r.1   100826128   protein WHAT'S THIS FACTOR 1 homolog 

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Top 50 coexpressed genes to 102579661 (sot-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 102579661 (sot-r.1 coexpression data)

CoexMap"102579661"


sotLOC102579661 | Entrez gene ID : 102579661      
Species sot sly nta ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 1 1 2 1 1 1 1 1 2 2 2 1 1 1 3 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (1335 genes)  IEA  
Protein XP_006355871.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  mito 4,  cyto_mito 2,  nucl 1  (predict for XP_006355871.1)
Subcellular
localization
TargetP
mito 8,  other 3  (predict for XP_006355871.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sot-r.1
for
102579661
sly-u.5
for
101252024
nta-r.1
for
107785131
nta-r.1
for
107781859
ath-u.5
for
AT3G63090
gma-u.5
for
100778092
bra-r.6
for
103842112
vvi-u.5
for
100256232
ppo-u.5
for
7458248
mtr-u.5
for
25482543
mtr-u.5
for
11425067
ghi-r.1
for
107955249
ghi-r.1
for
107954686
bna-r.1
for
106375239
bna-r.1
for
106411594
cit-r.1
for
102623745
osa-u.5
for
4326712
zma-u.5
for
100304335
tae-r.2
for
123189684
tae-r.2
for
123053812
tae-r.2
for
123045947
hvu-r.1
for
123427164
sbi-r.1
for
8070310
bdi-r.1
for
100826128


Ortholog ID: 10840
Species sot sly nta nta ath gma bra vvi ppo mtr mtr ghi ghi bna bna cit osa zma tae tae tae hvu sbi bdi
Symbol LOC102579661 LOC101252024 LOC107785131 LOC107781859 AT3G63090 LOC100778092 LOC103842112 LOC100256232 LOC7458248 LOC25482543 LOC11425067 LOC107955249 LOC107954686 LOC106375239 LOC106411594 LOC102623745 LOC4326712 LOC100304335 LOC123189684 LOC123053812 LOC123045947 LOC123427164 LOC8070310 LOC100826128
Function* protein ROOT PRIMORDIUM DEFECTIVE 1 protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic-like Ubiquitin carboxyl-terminal hydrolase family protein protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic uncharacterized LOC100304335 protein WHAT'S THIS FACTOR 1, chloroplastic protein WHAT'S THIS FACTOR 1, chloroplastic protein WHAT'S THIS FACTOR 1, chloroplastic protein WHAT'S THIS FACTOR 1, chloroplastic protein ROOT PRIMORDIUM DEFECTIVE 1 protein WHAT'S THIS FACTOR 1 homolog
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03082 ATP-dependent chromatin remodeling 2
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 4
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 102579661 101252024 107785131 107781859 825484 100778092 103842112 100256232 7458248 25482543 11425067 107955249 107954686 106375239 106411594 102623745 4326712 100304335 123189684 123053812 123045947 123427164 8070310 100826128
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