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Orthologous genes in OrthoFinder**

Species Gene Description
 mtr-u.5   25482543   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 mtr-r.5   25482543   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 mtr-u.5   11425067   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 gma-u.5   100778092   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 ppo-u.5   7458248   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 ath-u.5   AT3G63090   Ubiquitin carboxyl-terminal hydrolase family protein 
 vvi-u.5   100256232   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 sly-u.5   101252024   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 osa-u.5   4326712   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 zma-u.5   100304335   uncharacterized LOC100304335 

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Top 50 coexpressed genes to 25482543 (mtr-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 25482543 (mtr-u.5 coexpression data)

CoexMap"25482543"


mtrLOC25482543 | Entrez gene ID : 25482543    
Species mtr gma ppo ath vvi sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 3 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (1400 genes)  IEA  
Protein XP_013466576.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  nucl 1,  mito 1,  cyto_mito 1  (predict for XP_013466576.1)
Subcellular
localization
TargetP
scret 4  (predict for XP_013466576.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

mtr-u.5
for
25482543
mtr-r.5
for
25482543
mtr-u.5
for
11425067
gma-u.5
for
100778092
ppo-u.5
for
7458248
ath-u.5
for
AT3G63090
vvi-u.5
for
100256232
sly-u.5
for
101252024
osa-u.5
for
4326712
zma-u.5
for
100304335


Ortholog ID: 10840
Species mtr mtr gma ppo ath bra vvi ghi ghi bna bna cit sly sot nta nta osa zma tae tae hvu sbi bdi
Symbol LOC11425067 LOC25482543 LOC100778092 LOC7458248 AT3G63090 LOC103842112 LOC100256232 LOC107955249 LOC107954686 LOC106375239 LOC106411594 LOC102623745 LOC101252024 LOC102579661 LOC107785131 LOC107781859 LOC4326712 LOC100304335 LOC123045947 LOC123189684 LOC123427164 LOC8070310 LOC100826128
Function* protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic Ubiquitin carboxyl-terminal hydrolase family protein protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein ROOT PRIMORDIUM DEFECTIVE 1 protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic-like protein WHAT'S THIS FACTOR 1 homolog, chloroplastic uncharacterized LOC100304335 protein WHAT'S THIS FACTOR 1, chloroplastic protein WHAT'S THIS FACTOR 1, chloroplastic protein WHAT'S THIS FACTOR 1, chloroplastic protein ROOT PRIMORDIUM DEFECTIVE 1 protein WHAT'S THIS FACTOR 1 homolog
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03082 ATP-dependent chromatin remodeling 2
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 4
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 11425067 25482543 100778092 7458248 825484 103842112 100256232 107955249 107954686 106375239 106411594 102623745 101252024 102579661 107785131 107781859 4326712 100304335 123045947 123189684 123427164 8070310 100826128
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