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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100305765   ubiquitin-specific protease 
 gma-r.7   100305765   ubiquitin-specific protease 
 gma-u.5   100787737   ubiquitin carboxyl-terminal hydrolase 4 
 gma-u.5   100794462   ubiquitin carboxyl-terminal hydrolase 4 
 gma-u.5   100812627   ubiquitin carboxyl-terminal hydrolase 4 
 mtr-u.5   25501908   ubiquitin carboxyl-terminal hydrolase 4 
 mtr-u.5   11415028   ubiquitin carboxyl-terminal hydrolase 4 
 ppo-u.5   7490209   ubiquitin carboxyl-terminal hydrolase 4 
 ppo-u.5   7471503   ubiquitin carboxyl-terminal hydrolase 4 
 ath-u.5   UBP4   ubiquitin-specific protease 4 
 ath-u.5   UBP3   ubiquitin-specific protease 3 
 vvi-u.5   100253333   ubiquitin carboxyl-terminal hydrolase 4 
 vvi-u.5   100253110   ubiquitin carboxyl-terminal hydrolase 3 
 sly-u.5   101250454   ubiquitin carboxyl-terminal hydrolase 4 
 sly-u.5   101257760   ubiquitin carboxyl-terminal hydrolase 4 
 osa-u.5   4336009   ubiquitin carboxyl-terminal hydrolase 4 
 osa-u.5   4331901   ubiquitin carboxyl-terminal hydrolase 3 
 osa-u.5   4329740   ubiquitin carboxyl-terminal hydrolase 4 
 zma-u.5   100304268   putative ubiquitin carboxyl-terminal hydrolase superfamily protein 
 zma-u.5   100280339   putative ubiquitin carboxyl-terminal hydrolase superfamily protein 
 zma-u.5   100274352   uncharacterized LOC100274352 

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Top 50 coexpressed genes to 100305765 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100305765 (gma-u.5 coexpression data)

CoexMap"100305765"


gmaLOC100305765 | Entrez gene ID : 100305765      
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 5 2 2 2 2 2 3 3 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0016579 [list] [network] protein deubiquitination  (128 genes)  IEA  
GO CC
GO:0005829 [list] [network] cytosol  (1702 genes)  IEA  
GO:0005634 [list] [network] nucleus  (5531 genes)  IEA  
GO MF
GO:0004843 [list] [network] cysteine-type deubiquitinase activity  (98 genes)  IEA  
Protein NP_001236383.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  cyto 2  (predict for NP_001236383.2)
Subcellular
localization
TargetP
other 9  (predict for NP_001236383.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100305765

.
gma-r.7
for
100305765

.
gma-u.5
for
100787737

.
gma-u.5
for
100794462

.
gma-u.5
for
100812627

.
mtr-u.5
for
25501908

.
mtr-u.5
for
11415028

.
ppo-u.5
for
7490209

.
ppo-u.5
for
7471503

.
ath-u.5
for
UBP4

.
ath-u.5
for
UBP3

.
vvi-u.5
for
100253333

.
vvi-u.5
for
100253110

.
sly-u.5
for
101250454

.
sly-u.5
for
101257760

.
osa-u.5
for
4336009

.
osa-u.5
for
4331901

.
osa-u.5
for
4329740

.
zma-u.5
for
100304268

.
zma-u.5
for
100280339

.
zma-u.5
for
100274352

.


Ortholog ID: 2384
Species ath ath gma gma sly sly osa osa zma zma bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit bdi bdi nta nta
Symbol UBP4 UBP3 LOC100787737 LOC100812627 LOC101257760 LOC101250454 LOC4329740 LOC4331901 LOC100280339 LOC100304268 LOC103853712 LOC100253333 LOC100253110 LOC7471503 LOC7490209 LOC25501908 LOC11415028 LOC123098734 LOC123165815 LOC123426880 LOC123449674 LOC107950458 LOC107942528 LOC106382597 LOC106361373 CHLRE_06g250750v5 LOC8057450 LOC8072619 LOC102582326 LOC102579768 LOC102622180 LOC100846646 LOC104583789 LOC107806258 LOC107804851
Function* ubiquitin-specific protease 4 ubiquitin-specific protease 3 ubiquitin carboxyl-terminal hydrolase 4 ubiquitin carboxyl-terminal hydrolase 4 ubiquitin carboxyl-terminal hydrolase 4 ubiquitin carboxyl-terminal hydrolase 4 ubiquitin carboxyl-terminal hydrolase 4 ubiquitin carboxyl-terminal hydrolase 3 putative ubiquitin carboxyl-terminal hydrolase superfamily protein putative ubiquitin carboxyl-terminal hydrolase superfamily protein ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 4 ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 4 ubiquitin carboxyl-terminal hydrolase 4 ubiquitin carboxyl-terminal hydrolase 4 ubiquitin carboxyl-terminal hydrolase 4 ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 4-like ubiquitin carboxyl-terminal hydrolase 3-like ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 3 uncharacterized protein ubiquitin carboxyl-terminal hydrolase 4 ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 3-like ubiquitin carboxyl-terminal hydrolase 4 ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 4 ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 3
sly04382 Cornified envelope formation 2
sly04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00250 Alanine, aspartate and glutamate metabolism 2
sly00230 Purine metabolism 2
sly01232 Nucleotide metabolism 2
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04144 Endocytosis 2
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 5
zma04141 Protein processing in endoplasmic reticulum 4
zma03015 mRNA surveillance pathway 2
zma04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
vvi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 3
ppo04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00920 Sulfur metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00920 Sulfur metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04626 Plant-pathogen interaction 2
hvu00510 N-Glycan biosynthesis 2
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 2
bna00562 Inositol phosphate metabolism 2
bna04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04130 SNARE interactions in vesicular transport 6
bna00562 Inositol phosphate metabolism 2
bna04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00190 Oxidative phosphorylation 6
cre04145 Phagosome 6
cre04142 Lysosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 2
bdi03420 Nucleotide excision repair 2
bdi03430 Mismatch repair 2
bdi03440 Homologous recombination 2
bdi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 2
nta04075 Plant hormone signal transduction 2
nta04626 Plant-pathogen interaction 2
nta03008 Ribosome biogenesis in eukaryotes 2
nta03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 816763 830150 100787737 100812627 101257760 101250454 4329740 4331901 100280339 100304268 103853712 100253333 100253110 7471503 7490209 25501908 11415028 123098734 123165815 123426880 123449674 107950458 107942528 106382597 106361373 5722207 8057450 8072619 102582326 102579768 102622180 100846646 104583789 107806258 107804851
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