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Orthologous genes in OrthoFinder**

Species Gene Description
 mtr-u.5   11415028   ubiquitin carboxyl-terminal hydrolase 4 
 mtr-r.5   11415028   ubiquitin carboxyl-terminal hydrolase 4 
 mtr-m.5   11415028   ubiquitin carboxyl-terminal hydrolase 4 
 mtr-u.5   25501908   ubiquitin carboxyl-terminal hydrolase 4 
 gma-u.5   100305765   ubiquitin-specific protease 
 gma-u.5   100787737   ubiquitin carboxyl-terminal hydrolase 4 
 gma-u.5   100794462   ubiquitin carboxyl-terminal hydrolase 4 
 ppo-u.5   7490209   ubiquitin carboxyl-terminal hydrolase 4 
 ppo-u.5   7471503   ubiquitin carboxyl-terminal hydrolase 4 
 ath-u.5   UBP4   ubiquitin-specific protease 4 
 ath-u.5   UBP3   ubiquitin-specific protease 3 
 vvi-u.5   100253110   ubiquitin carboxyl-terminal hydrolase 3 
 vvi-u.5   100253333   ubiquitin carboxyl-terminal hydrolase 4 
 sly-u.5   101250454   ubiquitin carboxyl-terminal hydrolase 4 
 sly-u.5   101257760   ubiquitin carboxyl-terminal hydrolase 4 
 osa-u.5   4336009   ubiquitin carboxyl-terminal hydrolase 4 
 osa-u.5   4331901   ubiquitin carboxyl-terminal hydrolase 3 
 osa-u.5   4329740   ubiquitin carboxyl-terminal hydrolase 4 
 zma-u.5   100304268   putative ubiquitin carboxyl-terminal hydrolase superfamily protein 
 zma-u.5   100280339   putative ubiquitin carboxyl-terminal hydrolase superfamily protein 
 zma-u.5   100274352   uncharacterized LOC100274352 

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Top 50 coexpressed genes to 11415028 (mtr-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 11415028 (mtr-u.5 coexpression data)

CoexMap"11415028"


mtrLOC11415028 | Entrez gene ID : 11415028      
Species mtr gma ppo ath vvi sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 4 3 2 2 2 2 3 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0016579 [list] [network] protein deubiquitination  (75 genes)  IEA  
GO CC
GO:0005829 [list] [network] cytosol  (784 genes)  IEA  
GO:0005634 [list] [network] nucleus  (2707 genes)  IEA  
GO MF
GO:0004843 [list] [network] cysteine-type deubiquitinase activity  (60 genes)  IEA  
Protein XP_003601945.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 4  (predict for XP_003601945.1)
Subcellular
localization
TargetP
other 9  (predict for XP_003601945.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

mtr-u.5
for
11415028
mtr-r.5
for
11415028
mtr-m.5
for
11415028
mtr-u.5
for
25501908
gma-u.5
for
100305765
gma-u.5
for
100787737
gma-u.5
for
100794462
ppo-u.5
for
7490209
ppo-u.5
for
7471503
ath-u.5
for
UBP4
ath-u.5
for
UBP3
vvi-u.5
for
100253110
vvi-u.5
for
100253333
sly-u.5
for
101250454
sly-u.5
for
101257760
osa-u.5
for
4336009
osa-u.5
for
4331901
osa-u.5
for
4329740
zma-u.5
for
100304268
zma-u.5
for
100280339
zma-u.5
for
100274352


Ortholog ID: 2384
Species mtr mtr gma gma ppo ppo ath ath bra vvi vvi ghi ghi bna bna cit sly sly sot sot nta nta osa osa zma zma tae tae hvu hvu sbi sbi bdi bdi cre
Symbol LOC25501908 LOC11415028 LOC100787737 LOC100812627 LOC7471503 LOC7490209 UBP4 UBP3 LOC103853712 LOC100253333 LOC100253110 LOC107950458 LOC107942528 LOC106382597 LOC106361373 LOC102622180 LOC101257760 LOC101250454 LOC102582326 LOC102579768 LOC107806258 LOC107804851 LOC4329740 LOC4331901 LOC100280339 LOC100304268 LOC123098734 LOC123165815 LOC123426880 LOC123449674 LOC8057450 LOC8072619 LOC100846646 LOC104583789 CHLRE_06g250750v5
Function* ubiquitin carboxyl-terminal hydrolase 4 ubiquitin carboxyl-terminal hydrolase 4 ubiquitin carboxyl-terminal hydrolase 4 ubiquitin carboxyl-terminal hydrolase 4 ubiquitin carboxyl-terminal hydrolase 4 ubiquitin carboxyl-terminal hydrolase 4 ubiquitin-specific protease 4 ubiquitin-specific protease 3 ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 4 ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 4 ubiquitin carboxyl-terminal hydrolase 4 ubiquitin carboxyl-terminal hydrolase 4 ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 3-like ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 4 ubiquitin carboxyl-terminal hydrolase 3 putative ubiquitin carboxyl-terminal hydrolase superfamily protein putative ubiquitin carboxyl-terminal hydrolase superfamily protein ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 4-like ubiquitin carboxyl-terminal hydrolase 3-like ubiquitin carboxyl-terminal hydrolase 4 ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 4 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 3
ppo04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
vvi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 2
bna00562 Inositol phosphate metabolism 2
bna04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04130 SNARE interactions in vesicular transport 6
bna00562 Inositol phosphate metabolism 2
bna04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 3
sly04382 Cornified envelope formation 2
sly04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00250 Alanine, aspartate and glutamate metabolism 2
sly00230 Purine metabolism 2
sly01232 Nucleotide metabolism 2
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 2
nta04075 Plant hormone signal transduction 2
nta04626 Plant-pathogen interaction 2
nta03008 Ribosome biogenesis in eukaryotes 2
nta03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04144 Endocytosis 2
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 5
zma04141 Protein processing in endoplasmic reticulum 4
zma03015 mRNA surveillance pathway 2
zma04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00920 Sulfur metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00920 Sulfur metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04626 Plant-pathogen interaction 2
hvu00510 N-Glycan biosynthesis 2
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 2
bdi03420 Nucleotide excision repair 2
bdi03430 Mismatch repair 2
bdi03440 Homologous recombination 2
bdi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00190 Oxidative phosphorylation 6
cre04145 Phagosome 6
cre04142 Lysosome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 25501908 11415028 100787737 100812627 7471503 7490209 816763 830150 103853712 100253333 100253110 107950458 107942528 106382597 106361373 102622180 101257760 101250454 102582326 102579768 107806258 107804851 4329740 4331901 100280339 100304268 123098734 123165815 123426880 123449674 8057450 8072619 100846646 104583789 5722207
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