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Orthologous genes in OrthoFinder**

Species Gene Description
 nta-r.1   107787000   ubiquitin carboxyl-terminal hydrolase 3-like 
 nta-r.1   107776464   ubiquitin carboxyl-terminal hydrolase 3 
 nta-r.1   107804851   ubiquitin carboxyl-terminal hydrolase 3 
 nta-r.1   107806258   ubiquitin carboxyl-terminal hydrolase 3 
 sly-u.5   101250454   ubiquitin carboxyl-terminal hydrolase 4 
 sly-u.5   101257760   ubiquitin carboxyl-terminal hydrolase 4 
 sot-r.1   102579768   ubiquitin carboxyl-terminal hydrolase 3-like 
 sot-r.1   102582326   ubiquitin carboxyl-terminal hydrolase 3 
 ath-u.5   UBP4   ubiquitin-specific protease 4 
 ath-u.5   UBP3   ubiquitin-specific protease 3 
 gma-u.5   100305765   ubiquitin-specific protease 
 gma-u.5   100787737   ubiquitin carboxyl-terminal hydrolase 4 
 gma-u.5   100794462   ubiquitin carboxyl-terminal hydrolase 4 
 bra-r.6   103853712   ubiquitin carboxyl-terminal hydrolase 3 
 bra-r.6   103837901   ubiquitin carboxyl-terminal hydrolase 3 
 vvi-u.5   100253333   ubiquitin carboxyl-terminal hydrolase 4 
 vvi-u.5   100253110   ubiquitin carboxyl-terminal hydrolase 3 
 ppo-u.5   7490209   ubiquitin carboxyl-terminal hydrolase 4 
 ppo-u.5   7471503   ubiquitin carboxyl-terminal hydrolase 4 
 mtr-u.5   25501908   ubiquitin carboxyl-terminal hydrolase 4 
 mtr-u.5   11415028   ubiquitin carboxyl-terminal hydrolase 4 
 ghi-r.1   107950458   ubiquitin carboxyl-terminal hydrolase 3 
 ghi-r.1   107945449   ubiquitin carboxyl-terminal hydrolase 3 
 ghi-r.1   107942528   ubiquitin carboxyl-terminal hydrolase 3 
 bna-r.1   106361373   ubiquitin carboxyl-terminal hydrolase 3 
 bna-r.1   106377440   ubiquitin carboxyl-terminal hydrolase 3 
 bna-r.1   106382597   ubiquitin carboxyl-terminal hydrolase 3 
 cit-r.1   102622180   ubiquitin carboxyl-terminal hydrolase 4 
 osa-u.5   4336009   ubiquitin carboxyl-terminal hydrolase 4 
 osa-u.5   4331901   ubiquitin carboxyl-terminal hydrolase 3 
 osa-u.5   4329740   ubiquitin carboxyl-terminal hydrolase 4 
 zma-u.5   100304268   putative ubiquitin carboxyl-terminal hydrolase superfamily protein 
 zma-u.5   100280339   putative ubiquitin carboxyl-terminal hydrolase superfamily protein 
 zma-u.5   100274352   uncharacterized LOC100274352 
 tae-r.2   123127531   ubiquitin carboxyl-terminal hydrolase 4 
 tae-r.2   123045626   ubiquitin carboxyl-terminal hydrolase 4 
 tae-r.2   123053474   ubiquitin carboxyl-terminal hydrolase 4 
 hvu-r.1   123426880   ubiquitin carboxyl-terminal hydrolase 4-like 
 hvu-r.1   123402891   ubiquitin carboxyl-terminal hydrolase 4-like 
 hvu-r.1   123449674   ubiquitin carboxyl-terminal hydrolase 3-like 
 sbi-r.1   8057450   ubiquitin carboxyl-terminal hydrolase 4 
 sbi-r.1   8072619   ubiquitin carboxyl-terminal hydrolase 3 
 sbi-r.1   8081912   ubiquitin carboxyl-terminal hydrolase 3 
 bdi-r.1   100839657   ubiquitin carboxyl-terminal hydrolase 4 
 bdi-r.1   100846646   ubiquitin carboxyl-terminal hydrolase 3 
 bdi-r.1   104583789   ubiquitin carboxyl-terminal hydrolase 4 
 cre-r.1   CHLRE_06g250750v5   uncharacterized protein 

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Top 50 coexpressed genes to 107787000 (nta-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107787000 (nta-r.1 coexpression data)

CoexMap"107787000"


ntaLOC107787000 | Entrez gene ID : 107787000      
Species nta sly sot ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 4 2 2 2 3 2 2 2 2 3 3 1 3 3 3 3 3 3 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0016579 [list] [network] protein deubiquitination  (133 genes)  IEA  
GO CC
GO:0005829 [list] [network] cytosol  (1509 genes)  IEA  
GO:0005634 [list] [network] nucleus  (4980 genes)  IEA  
GO MF
GO:0004843 [list] [network] cysteine-type deubiquitinase activity  (106 genes)  IEA  
Protein XP_016463998.1 [sequence] [blastp]
XP_016464000.1 [sequence] [blastp]
XP_016464001.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for XP_016463998.1)
nucl 9  (predict for XP_016464000.1)
nucl 9  (predict for XP_016464001.1)
Subcellular
localization
TargetP
other 9  (predict for XP_016463998.1)
other 9  (predict for XP_016464000.1)
other 3,  mito 3  (predict for XP_016464001.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

nta-r.1
for
107787000
nta-r.1
for
107776464
nta-r.1
for
107804851
nta-r.1
for
107806258
sly-u.5
for
101250454
sly-u.5
for
101257760
sot-r.1
for
102579768
sot-r.1
for
102582326
ath-u.5
for
UBP4
ath-u.5
for
UBP3
gma-u.5
for
100305765
gma-u.5
for
100787737
gma-u.5
for
100794462
bra-r.6
for
103853712
bra-r.6
for
103837901
vvi-u.5
for
100253333
vvi-u.5
for
100253110
ppo-u.5
for
7490209
ppo-u.5
for
7471503
mtr-u.5
for
25501908
mtr-u.5
for
11415028
ghi-r.1
for
107950458
ghi-r.1
for
107945449
ghi-r.1
for
107942528
bna-r.1
for
106361373
bna-r.1
for
106377440
bna-r.1
for
106382597
cit-r.1
for
102622180
osa-u.5
for
4336009
osa-u.5
for
4331901
osa-u.5
for
4329740
zma-u.5
for
100304268
zma-u.5
for
100280339
zma-u.5
for
100274352
tae-r.2
for
123127531
tae-r.2
for
123045626
tae-r.2
for
123053474
hvu-r.1
for
123426880
hvu-r.1
for
123402891
hvu-r.1
for
123449674
sbi-r.1
for
8057450
sbi-r.1
for
8072619
sbi-r.1
for
8081912
bdi-r.1
for
100839657
bdi-r.1
for
100846646
bdi-r.1
for
104583789
cre-r.1
for
CHLRE_06g250750v5


Ortholog ID: 2384
Species nta nta nta sly sly sot sot ath ath gma gma gma bra bra vvi vvi ppo ppo mtr mtr ghi ghi ghi bna bna bna cit osa osa osa zma zma zma tae tae tae hvu hvu hvu sbi sbi sbi bdi bdi bdi cre
Symbol LOC107776464 LOC107804851 LOC107806258 LOC101250454 LOC101257760 LOC102579768 LOC102582326 UBP4 UBP3 LOC100787737 LOC100794462 LOC100812627 LOC103853712 LOC103837901 LOC100253333 LOC100253110 LOC7490209 LOC7471503 LOC25501908 LOC11415028 LOC107950458 LOC107942528 LOC107937234 LOC106361373 LOC106382597 LOC106368704 LOC102622180 LOC4336009 LOC4331901 LOC4329740 LOC100304268 LOC100280339 LOC100274352 LOC123098734 LOC123139208 LOC123165815 LOC123426880 LOC123402891 LOC123449674 LOC8057450 LOC8072619 LOC8081912 LOC100839657 LOC100846646 LOC104583789 CHLRE_06g250750v5
Function* ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 4 ubiquitin carboxyl-terminal hydrolase 4 ubiquitin carboxyl-terminal hydrolase 3-like ubiquitin carboxyl-terminal hydrolase 3 ubiquitin-specific protease 4 ubiquitin-specific protease 3 ubiquitin carboxyl-terminal hydrolase 4 ubiquitin carboxyl-terminal hydrolase 4 ubiquitin carboxyl-terminal hydrolase 4 ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 4 ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 4 ubiquitin carboxyl-terminal hydrolase 4 ubiquitin carboxyl-terminal hydrolase 4 ubiquitin carboxyl-terminal hydrolase 4 ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 4-like ubiquitin carboxyl-terminal hydrolase 4 ubiquitin carboxyl-terminal hydrolase 4 ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 4 putative ubiquitin carboxyl-terminal hydrolase superfamily protein putative ubiquitin carboxyl-terminal hydrolase superfamily protein uncharacterized LOC100274352 ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 4 ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 4-like ubiquitin carboxyl-terminal hydrolase 4-like ubiquitin carboxyl-terminal hydrolase 3-like ubiquitin carboxyl-terminal hydrolase 4 ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 4 ubiquitin carboxyl-terminal hydrolase 3 ubiquitin carboxyl-terminal hydrolase 4 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 2
nta04075 Plant hormone signal transduction 2
nta04626 Plant-pathogen interaction 2
nta03008 Ribosome biogenesis in eukaryotes 2
nta03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00250 Alanine, aspartate and glutamate metabolism 2
sly00230 Purine metabolism 2
sly01232 Nucleotide metabolism 2
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 3
sly04382 Cornified envelope formation 2
sly04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04136 Autophagy - other 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 2
bra04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
vvi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 3
ppo04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04130 SNARE interactions in vesicular transport 6
bna00562 Inositol phosphate metabolism 2
bna04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 2
bna00562 Inositol phosphate metabolism 2
bna04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00562 Inositol phosphate metabolism 2
bna04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 2
osa04120 Ubiquitin mediated proteolysis 2
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04144 Endocytosis 2
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 5
zma04141 Protein processing in endoplasmic reticulum 4
zma03015 mRNA surveillance pathway 2
zma04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00020 Citrate cycle (TCA cycle) 8
zma01200 Carbon metabolism 8
zma01210 2-Oxocarboxylic acid metabolism 7
zma00010 Glycolysis / Gluconeogenesis 4
zma01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00920 Sulfur metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00190 Oxidative phosphorylation 4
tae04145 Phagosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00920 Sulfur metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04626 Plant-pathogen interaction 2
hvu00510 N-Glycan biosynthesis 2
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 10
hvu00190 Oxidative phosphorylation 3
hvu04145 Phagosome 3
hvu04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 10
bdi03015 mRNA surveillance pathway 2
bdi04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 2
bdi03420 Nucleotide excision repair 2
bdi03430 Mismatch repair 2
bdi03440 Homologous recombination 2
bdi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00190 Oxidative phosphorylation 6
cre04145 Phagosome 6
cre04142 Lysosome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107776464 107804851 107806258 101250454 101257760 102579768 102582326 816763 830150 100787737 100794462 100812627 103853712 103837901 100253333 100253110 7490209 7471503 25501908 11415028 107950458 107942528 107937234 106361373 106382597 106368704 102622180 4336009 4331901 4329740 100304268 100280339 100274352 123098734 123139208 123165815 123426880 123402891 123449674 8057450 8072619 8081912 100839657 100846646 104583789 5722207
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