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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100306302   pentatricopeptide repeat-containing protein At4g04790, mitochondrial 
 gma-r.7   100306302   pentatricopeptide repeat-containing protein At4g04790, mitochondrial 
 gma-u.5   100787964   pentatricopeptide repeat-containing protein At4g04790, mitochondrial 
 gma-u.5   100790259   pentatricopeptide repeat-containing protein At4g04790, mitochondrial 
 mtr-u.5   11446150   pentatricopeptide repeat-containing protein At4g04790, mitochondrial 
 mtr-u.5   11410691   pentatricopeptide repeat-containing protein At4g04790, mitochondrial 
 ppo-u.5   7454408   pentatricopeptide repeat-containing protein At4g04790, mitochondrial 
 ppo-u.5   18095898   pentatricopeptide repeat-containing protein At4g04790, mitochondrial 
 ath-u.5   AT4G04790   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-u.5   AT4G21880   Pentatricopeptide repeat (PPR) superfamily protein 
 vvi-u.5   100250302   pentatricopeptide repeat-containing protein At4g04790, mitochondrial 
 sly-u.5   101258770   pentatricopeptide repeat-containing protein 
 osa-u.5   4328206   pentatricopeptide repeat-containing protein At4g04790, mitochondrial 
 zma-u.5   103626578   pentatricopeptide repeat-containing protein At4g04790, mitochondrial 

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Top 50 coexpressed genes to 100306302 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100306302 (gma-u.5 coexpression data)

CoexMap"100306302"


gmaLOC100306302 | Entrez gene ID : 100306302      
Species gma mtr ppo ath vvi sly osa zma hvu sot tae nta bra cit ghi bna bdi sbi cre
Paralog 4 2 2 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (7243 genes)  IEA  
Protein XP_003539564.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  mito 3,  cyto_mito 2,  chlo 1,  cyto 1,  cysk 1  (predict for XP_003539564.1)
Subcellular
localization
TargetP
mito 8,  chlo 3  (predict for XP_003539564.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100306302

.
gma-r.7
for
100306302

.
gma-u.5
for
100787964

.
gma-u.5
for
100790259

.
mtr-u.5
for
11446150

.
mtr-u.5
for
11410691

.
ppo-u.5
for
7454408

.
ppo-u.5
for
18095898

.
ath-u.5
for
AT4G04790

.
ath-u.5
for
AT4G21880

.
vvi-u.5
for
100250302

.
sly-u.5
for
101258770

.
osa-u.5
for
4328206

.
zma-u.5
for
103626578

.


Ortholog ID: 5534
Species ath ath gma sly osa zma bra bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta
Symbol AT4G21880 AT4G04790 LOC100306302 LOC101258770 LOC4328206 LOC103626578 LOC103839815 LOC103859553 LOC100250302 LOC18095898 LOC7454408 LOC11410691 LOC123136097 LOC123132071 LOC123401633 LOC107928609 LOC107916525 LOC106403870 LOC106416180 LOC8069932 LOC102600742 LOC102610475 LOC100830343 LOC107794472
Function* Pentatricopeptide repeat (PPR) superfamily protein Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At4g04790, mitochondrial pentatricopeptide repeat-containing protein pentatricopeptide repeat-containing protein At4g04790, mitochondrial pentatricopeptide repeat-containing protein At4g04790, mitochondrial pentatricopeptide repeat-containing protein At4g04790, mitochondrial pentatricopeptide repeat-containing protein At4g21880, mitochondrial pentatricopeptide repeat-containing protein At4g04790, mitochondrial pentatricopeptide repeat-containing protein At4g04790, mitochondrial pentatricopeptide repeat-containing protein At4g04790, mitochondrial pentatricopeptide repeat-containing protein At4g04790, mitochondrial pentatricopeptide repeat-containing protein At4g04790, mitochondrial pentatricopeptide repeat-containing protein At4g04790, mitochondrial pentatricopeptide repeat-containing protein At4g04790, mitochondrial-like pentatricopeptide repeat-containing protein At4g04790, mitochondrial pentatricopeptide repeat-containing protein At4g04790, mitochondrial pentatricopeptide repeat-containing protein At4g21880, mitochondrial-like pentatricopeptide repeat-containing protein At4g04790, mitochondrial pentatricopeptide repeat-containing protein At4g04790, mitochondrial pentatricopeptide repeat-containing protein At4g04790, mitochondrial-like pentatricopeptide repeat-containing protein At4g04790, mitochondrial pentatricopeptide repeat-containing protein At4g04790, mitochondrial pentatricopeptide repeat-containing protein At4g04790, mitochondrial-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 3
gma00510 N-Glycan biosynthesis 2
gma00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03083 Polycomb repressive complex 3
sly03022 Basal transcription factors 2
sly03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 3
zma03015 mRNA surveillance pathway 2
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04814 Motor proteins 4
mtr04145 Phagosome 3
mtr04517 IgSF CAM signaling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 9
tae03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 9
tae03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
bdi00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03430 Mismatch repair 2
nta04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828277 825816 100306302 101258770 4328206 103626578 103839815 103859553 100250302 18095898 7454408 11410691 123136097 123132071 123401633 107928609 107916525 106403870 106416180 8069932 102600742 102610475 100830343 107794472
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