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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   100383019   pentatricopeptide repeat-containing protein At2g06000 
 zma-r.6   100383019   pentatricopeptide repeat-containing protein At2g06000 
 zma-u.5   103646391   pentatricopeptide repeat-containing protein 
 sbi-r.1   8079389   pentatricopeptide repeat-containing protein At2g06000 
 osa-u.5   4335965   pentatricopeptide repeat-containing protein At2g06000 
 tae-r.2   123189327   pentatricopeptide repeat-containing protein At2g06000 
 tae-r.2   123053421   pentatricopeptide repeat-containing protein At2g06000 
 tae-r.2   123045585   pentatricopeptide repeat-containing protein At2g06000 
 hvu-r.1   123426835   pentatricopeptide repeat-containing protein At2g06000-like 
 bdi-r.1   100828567   pentatricopeptide repeat-containing protein At2g06000 
 ath-u.5   AT2G06000   Pentatricopeptide repeat (PPR) superfamily protein 
 gma-u.5   100816463   pentatricopeptide repeat-containing protein At2g06000 
 gma-u.5   100798448   pentatricopeptide repeat-containing protein At2g06000 
 gma-u.5   100788338   pentatricopeptide repeat-containing protein At2g06000 
 sly-u.5   101262963   pentatricopeptide repeat-containing protein At2g06000 
 bra-r.6   103828504   pentatricopeptide repeat-containing protein At2g06000 
 vvi-u.5   100252561   pentatricopeptide repeat-containing protein At2g06000 
 ppo-u.5   18100335   pentatricopeptide repeat-containing protein At2g06000 
 mtr-u.5   25491979   pentatricopeptide repeat-containing protein At2g06000 
 mtr-u.5   25486513   pentatricopeptide repeat-containing protein At2g06000 
 ghi-r.1   121202957   pentatricopeptide repeat-containing protein At2g06000 
 ghi-r.1   107958836   pentatricopeptide repeat-containing protein At2g06000 
 ghi-r.1   107907096   pentatricopeptide repeat-containing protein At2g06000 
 bna-r.1   106411480   pentatricopeptide repeat-containing protein At2g06000-like 
 bna-r.1   106357745   pentatricopeptide repeat-containing protein At2g06000 
 sot-r.1   102597229   pentatricopeptide repeat-containing protein At2g06000 
 cit-r.1   102614332   pentatricopeptide repeat-containing protein At2g06000 
 nta-r.1   107788832   uncharacterized LOC107788832 
 nta-r.1   107778825   uncharacterized LOC107778825 

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Top 50 coexpressed genes to 100383019 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100383019 (zma-u.5 coexpression data)

CoexMap"100383019"


zmaLOC100383019 | Entrez gene ID : 100383019    
Species zma sbi osa tae hvu bdi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 3 1 1 3 1 1 1 3 1 1 1 1 2 3 2 1 1 2 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0003729 [list] [network] mRNA binding  (346 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4389 genes)  IEA  
Protein XP_020400753.1 [sequence] [blastp]
XP_020400757.1 [sequence] [blastp]
XP_035819365.1 [sequence] [blastp]
XP_035819366.1 [sequence] [blastp]
Subcellular
localization
wolf
cysk 4,  cyto 4,  cysk_plas 2,  nucl 2  (predict for XP_020400753.1)
cyto 4,  nucl 3,  chlo 3,  nucl_plas 2  (predict for XP_020400757.1)
cysk 4,  cyto 4,  cysk_plas 2,  nucl 2  (predict for XP_035819365.1)
cysk 4,  cyto 4,  cysk_plas 2,  nucl 2  (predict for XP_035819366.1)
Subcellular
localization
TargetP
other 8  (predict for XP_020400753.1)
mito 9  (predict for XP_020400757.1)
other 8  (predict for XP_035819365.1)
other 8  (predict for XP_035819366.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
100383019
zma-r.6
for
100383019
zma-u.5
for
103646391
sbi-r.1
for
8079389
osa-u.5
for
4335965
tae-r.2
for
123189327
tae-r.2
for
123053421
tae-r.2
for
123045585
hvu-r.1
for
123426835
bdi-r.1
for
100828567
ath-u.5
for
AT2G06000
gma-u.5
for
100816463
gma-u.5
for
100798448
gma-u.5
for
100788338
sly-u.5
for
101262963
bra-r.6
for
103828504
vvi-u.5
for
100252561
ppo-u.5
for
18100335
mtr-u.5
for
25491979
mtr-u.5
for
25486513
ghi-r.1
for
121202957
ghi-r.1
for
107958836
ghi-r.1
for
107907096
bna-r.1
for
106411480
bna-r.1
for
106357745
sot-r.1
for
102597229
cit-r.1
for
102614332
nta-r.1
for
107788832
nta-r.1
for
107778825


Ortholog ID: 7502
Species zma zma sbi osa tae tae tae hvu bdi ath gma gma gma sly bra vvi ppo mtr mtr ghi ghi ghi bna bna sot cit nta nta
Symbol LOC100383019 LOC103646391 LOC8079389 LOC4335965 LOC123189327 LOC123053421 LOC123045585 LOC123426835 LOC100828567 AT2G06000 LOC100816463 LOC100798448 LOC100788338 LOC101262963 LOC103828504 LOC100252561 LOC18100335 LOC25491979 LOC25486513 LOC121202957 LOC107958836 LOC107907096 LOC106411480 LOC106357745 LOC102597229 LOC102614332 LOC107788832 LOC107778825
Function* pentatricopeptide repeat-containing protein At2g06000 pentatricopeptide repeat-containing protein pentatricopeptide repeat-containing protein At2g06000 pentatricopeptide repeat-containing protein At2g06000 pentatricopeptide repeat-containing protein At2g06000 pentatricopeptide repeat-containing protein At2g06000 pentatricopeptide repeat-containing protein At2g06000 pentatricopeptide repeat-containing protein At2g06000-like pentatricopeptide repeat-containing protein At2g06000 Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein At2g06000 pentatricopeptide repeat-containing protein At2g06000 pentatricopeptide repeat-containing protein At2g06000 pentatricopeptide repeat-containing protein At2g06000 pentatricopeptide repeat-containing protein At2g06000 pentatricopeptide repeat-containing protein At2g06000 pentatricopeptide repeat-containing protein At2g06000 pentatricopeptide repeat-containing protein At2g06000 pentatricopeptide repeat-containing protein At2g06000 pentatricopeptide repeat-containing protein At2g06000 pentatricopeptide repeat-containing protein At2g06000 pentatricopeptide repeat-containing protein At2g06000 pentatricopeptide repeat-containing protein At2g06000-like pentatricopeptide repeat-containing protein At2g06000 pentatricopeptide repeat-containing protein At2g06000 pentatricopeptide repeat-containing protein At2g06000 uncharacterized LOC107788832 uncharacterized LOC107778825
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 4
ppo03010 Ribosome 3
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04144 Endocytosis 6
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04144 Endocytosis 6
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100383019 103646391 8079389 4335965 123189327 123053421 123045585 123426835 100828567 815153 100816463 100798448 100788338 101262963 103828504 100252561 18100335 25491979 25486513 121202957 107958836 107907096 106411480 106357745 102597229 102614332 107788832 107778825
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