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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100788338   pentatricopeptide repeat-containing protein At2g06000 
 gma-r.7   100788338   pentatricopeptide repeat-containing protein At2g06000 
 gma-u.5   100816463   pentatricopeptide repeat-containing protein At2g06000 
 gma-u.5   100798448   pentatricopeptide repeat-containing protein At2g06000 
 mtr-u.5   25491979   pentatricopeptide repeat-containing protein At2g06000 
 mtr-u.5   25486513   pentatricopeptide repeat-containing protein At2g06000 
 ppo-u.5   18100335   pentatricopeptide repeat-containing protein At2g06000 
 ath-u.5   AT2G06000   Pentatricopeptide repeat (PPR) superfamily protein 
 vvi-u.5   100252561   pentatricopeptide repeat-containing protein At2g06000 
 sly-u.5   101262963   pentatricopeptide repeat-containing protein At2g06000 
 osa-u.5   4335965   pentatricopeptide repeat-containing protein At2g06000 
 zma-u.5   100383019   pentatricopeptide repeat-containing protein At2g06000 
 zma-u.5   103646391   pentatricopeptide repeat-containing protein 

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Top 50 coexpressed genes to 100788338 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100788338 (gma-u.5 coexpression data)

CoexMap"100788338"


gmaLOC100788338 | Entrez gene ID : 100788338    
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 4 2 1 1 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (7243 genes)  IEA  
Protein XP_006581143.1 [sequence] [blastp]
XP_006581144.1 [sequence] [blastp]
XP_040872175.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 2,  E.R. 2,  cyto 1,  plas 1,  chlo_mito 1,  E.R._vacu 1,  cyto_plas 1  (predict for XP_006581143.1)
chlo 2,  E.R. 2,  cyto 1,  plas 1,  chlo_mito 1,  E.R._vacu 1,  cyto_plas 1  (predict for XP_006581144.1)
chlo 2,  cyto 1,  plas 1,  vacu 1,  E.R. 1,  chlo_mito 1,  E.R._vacu 1,  E.R._plas 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_040872175.1)
Subcellular
localization
TargetP
scret 8,  other 4  (predict for XP_006581143.1)
scret 8,  other 4  (predict for XP_006581144.1)
scret 8,  other 4  (predict for XP_040872175.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100788338

.
gma-r.7
for
100788338

.
gma-u.5
for
100816463

.
gma-u.5
for
100798448

.
mtr-u.5
for
25491979

.
mtr-u.5
for
25486513

.
ppo-u.5
for
18100335

.
ath-u.5
for
AT2G06000

.
vvi-u.5
for
100252561

.
sly-u.5
for
101262963

.
osa-u.5
for
4335965

.
zma-u.5
for
100383019

.
zma-u.5
for
103646391

.


Ortholog ID: 7502
Species ath gma gma sly osa zma zma bra vvi ppo mtr mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol AT2G06000 LOC100816463 LOC100788338 LOC101262963 LOC4335965 LOC100383019 LOC103646391 LOC103828504 LOC100252561 LOC18100335 LOC25491979 LOC25486513 LOC123189327 LOC123053421 LOC123426835 LOC121202957 LOC107907096 LOC106411480 LOC106357745 LOC8079389 LOC102597229 LOC102614332 LOC100828567 LOC107778825 LOC107788832
Function* Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein At2g06000 pentatricopeptide repeat-containing protein At2g06000 pentatricopeptide repeat-containing protein At2g06000 pentatricopeptide repeat-containing protein At2g06000 pentatricopeptide repeat-containing protein At2g06000 pentatricopeptide repeat-containing protein pentatricopeptide repeat-containing protein At2g06000 pentatricopeptide repeat-containing protein At2g06000 pentatricopeptide repeat-containing protein At2g06000 pentatricopeptide repeat-containing protein At2g06000 pentatricopeptide repeat-containing protein At2g06000 pentatricopeptide repeat-containing protein At2g06000 pentatricopeptide repeat-containing protein At2g06000 pentatricopeptide repeat-containing protein At2g06000-like pentatricopeptide repeat-containing protein At2g06000 pentatricopeptide repeat-containing protein At2g06000 pentatricopeptide repeat-containing protein At2g06000-like pentatricopeptide repeat-containing protein At2g06000 pentatricopeptide repeat-containing protein At2g06000 pentatricopeptide repeat-containing protein At2g06000 pentatricopeptide repeat-containing protein At2g06000 pentatricopeptide repeat-containing protein At2g06000 uncharacterized LOC107778825 uncharacterized LOC107788832
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 4
ppo03010 Ribosome 3
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04144 Endocytosis 6
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04144 Endocytosis 6
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 815153 100816463 100788338 101262963 4335965 100383019 103646391 103828504 100252561 18100335 25491979 25486513 123189327 123053421 123426835 121202957 107907096 106411480 106357745 8079389 102597229 102614332 100828567 107778825 107788832
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