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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-m.5   100527000   DNA-directed RNA polymerase subunit 10-like protein 
 gma-u.5   100500450   DNA-directed RNA polymerase subunit 10-like protein 
 gma-u.5   100775415   DNA-directed RNA polymerase subunit 10-like protein 
 gma-u.5   100797078   DNA-directed RNA polymerase subunit 10-like protein 
 mtr-u.5   25492856   DNA-directed RNA polymerase subunit 10-like protein 
 mtr-u.5   11405864   DNA-directed RNA polymerase subunit 10-like protein 
 ppo-u.5   18100279   DNA-directed RNA polymerases I, II, and III subunit RPABC5 
 ppo-u.5   7491904   DNA-directed RNA polymerases I, II, and III subunit RPABC5 
 ath-u.5   NRPB10   RNA polymerases N / 8 kDa subunit 
 bra-r.6   103871905   DNA-directed RNA polymerases I, II, and III subunit RPABC5 
 bra-r.6   103836229   DNA-directed RNA polymerases I, II, and III subunit RPABC5 
 vvi-u.5   100267114   DNA-directed RNA polymerase subunit 10-like protein 
 ghi-r.1   107946230   DNA-directed RNA polymerases I, II, and III subunit RPABC5 
 ghi-r.1   121210970   DNA-directed RNA polymerases I, II, and III subunit RPABC5 
 ghi-r.1   107909683   DNA-directed RNA polymerases I, II, and III subunit RPABC5 
 bna-r.1   106366999   DNA-directed RNA polymerases I, II, and III subunit RPABC5 
 bna-r.1   106362151   DNA-directed RNA polymerases I, II, and III subunit RPABC5 
 bna-r.1   106449027   DNA-directed RNA polymerases I, II, and III subunit RPABC5 
 cit-r.1   102624903   DNA-directed RNA polymerase subunit 10-like protein 
 sly-u.5   101251196   DNA-directed RNA polymerases I, II, and III subunit RPABC5 
 sot-r.1   102596451   DNA-directed RNA polymerases I, II, and III subunit RPABC5 
 osa-u.5   4351671   DNA-directed RNA polymerases I, II, and III subunit RPABC5 
 osa-u.5   4349985   DNA-directed RNA polymerases I, II, and III subunit RPABC5 
 zma-u.5   113633883   uncharacterized LOC113633883 
 zma-u.5   100286035   uncharacterized LOC100286035 
 zma-u.5   100281783   DNA-directed RNA polymerase II 8.2 kDa polypeptide 
 tae-r.2   123102857   DNA-directed RNA polymerases I, II, and III subunit RPABC5 
 tae-r.2   123120037   DNA-directed RNA polymerases I, II, and III subunit RPABC5 
 tae-r.2   123111008   DNA-directed RNA polymerases I, II, and III subunit RPABC5 
 hvu-r.1   123396538   DNA-directed RNA polymerases I, II, and III subunit RPABC5 
 hvu-r.1   123409349   DNA-directed RNA polymerases I, II, and III subunit RPABC5 
 sbi-r.1   8076306   DNA-directed RNA polymerases II, IV and V subunit 10 
 bdi-r.1   100822387   DNA-directed RNA polymerases I, II, and III subunit RPABC5 
 bdi-r.1   100828005   DNA-directed RNA polymerases I, II, and III subunit RPABC5 
 cre-r.1   CHLRE_13g571650v5   uncharacterized protein 

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Top 50 coexpressed genes to 100527000 (gma-m.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100527000 (gma-m.5 coexpression data)

CoexMap"100527000"


gmaLOC100527000 | Entrez gene ID : 100527000      
Species gma mtr ppo ath bra vvi ghi bna cit sly sot osa zma tae hvu sbi bdi cre nta
Paralog 4 2 2 1 2 1 3 3 1 1 1 2 3 3 2 1 2 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx03020 [list] [network] RNA polymerase (81 genes)
gmx03420 [list] [network] Nucleotide excision repair (129 genes)
GO BP
GO:0042797 [list] [network] tRNA transcription by RNA polymerase III  (12 genes)  IEA  
GO:0006360 [list] [network] transcription by RNA polymerase I  (21 genes)  IEA  
GO:0006366 [list] [network] transcription by RNA polymerase II  (130 genes)  IEA  
GO CC
GO:0005736 [list] [network] RNA polymerase I complex  (27 genes)  IEA  
GO:0005665 [list] [network] RNA polymerase II, core complex  (38 genes)  IEA  
GO:0005666 [list] [network] RNA polymerase III complex  (45 genes)  IEA  
GO MF
GO:0008270 [list] [network] zinc ion binding  (1182 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (3517 genes)  IEA  
Protein XP_003517695.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  mito 1,  cyto 1,  plas 1,  extr 1,  golg 1,  chlo_mito 1,  cyto_mito 1,  golg_plas 1,  cyto_plas 1  (predict for XP_003517695.1)
Subcellular
localization
TargetP
other 7  (predict for XP_003517695.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-m.5
for
100527000
gma-u.5
for
100500450
gma-u.5
for
100775415
gma-u.5
for
100797078
mtr-u.5
for
25492856
mtr-u.5
for
11405864
ppo-u.5
for
18100279
ppo-u.5
for
7491904
ath-u.5
for
NRPB10
bra-r.6
for
103871905
bra-r.6
for
103836229
vvi-u.5
for
100267114
ghi-r.1
for
107946230
ghi-r.1
for
121210970
ghi-r.1
for
107909683
bna-r.1
for
106366999
bna-r.1
for
106362151
bna-r.1
for
106449027
cit-r.1
for
102624903
sly-u.5
for
101251196
sot-r.1
for
102596451
osa-u.5
for
4351671
osa-u.5
for
4349985
zma-u.5
for
113633883
zma-u.5
for
100286035
zma-u.5
for
100281783
tae-r.2
for
123102857
tae-r.2
for
123120037
tae-r.2
for
123111008
hvu-r.1
for
123396538
hvu-r.1
for
123409349
sbi-r.1
for
8076306
bdi-r.1
for
100822387
bdi-r.1
for
100828005
cre-r.1
for
CHLRE_13g571650v5


Ortholog ID: 3857
Species gma gma mtr mtr ppo ppo ath bra bra vvi ghi ghi ghi bna bna bna cit sly sot osa osa zma zma zma tae tae tae hvu hvu sbi bdi bdi cre
Symbol LOC100500450 LOC100797078 LOC25492856 LOC11405864 LOC18100279 LOC7491904 NRPB10 LOC103871905 LOC103836229 LOC100267114 LOC121210970 LOC107909683 LOC107886565 LOC106366999 LOC106362151 LOC106449027 LOC102624903 LOC101251196 LOC102596451 LOC4351671 LOC4349985 LOC113633883 LOC100286035 LOC100281783 LOC123102857 LOC123111008 LOC123079565 LOC123396538 LOC123409349 LOC8076306 LOC100822387 LOC100828005 CHLRE_13g571650v5
Function* DNA-directed RNA polymerase subunit 10-like protein DNA-directed RNA polymerase subunit 10-like protein DNA-directed RNA polymerase subunit 10-like protein DNA-directed RNA polymerase subunit 10-like protein DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerases I, II, and III subunit RPABC5 RNA polymerases N / 8 kDa subunit DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerase subunit 10-like protein DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerase subunit 10-like protein DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerases I, II, and III subunit RPABC5 uncharacterized LOC113633883 uncharacterized LOC100286035 DNA-directed RNA polymerase II 8.2 kDa polypeptide DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerases II, IV and V subunit 10 DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerases I, II, and III subunit RPABC5 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 11
mtr03020 RNA polymerase 4
mtr03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 9
mtr03040 Spliceosome 4
mtr03020 RNA polymerase 3
mtr03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 5
ppo03040 Spliceosome 4
ppo03008 Ribosome biogenesis in eukaryotes 2
ppo03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 4
ppo03020 RNA polymerase 2
ppo03420 Nucleotide excision repair 2
ppo03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 8
ath03020 RNA polymerase 3
ath03420 Nucleotide excision repair 3
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03020 RNA polymerase 4
bra03420 Nucleotide excision repair 3
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00190 Oxidative phosphorylation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04626 Plant-pathogen interaction 2
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04626 Plant-pathogen interaction 2
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 5
bna03020 RNA polymerase 4
bna03420 Nucleotide excision repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 6
bna03020 RNA polymerase 4
bna03420 Nucleotide excision repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 4
bna03420 Nucleotide excision repair 4
bna00510 N-Glycan biosynthesis 2
bna00513 Various types of N-glycan biosynthesis 2
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 5
cit03020 RNA polymerase 2
cit03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03018 RNA degradation 3
sly03040 Spliceosome 3
sly03020 RNA polymerase 2
sly03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot03010 Ribosome 2
sot03018 RNA degradation 2
sot03020 RNA polymerase 2
sot03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03020 RNA polymerase 3
osa03420 Nucleotide excision repair 3
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 3
osa03040 Spliceosome 2
osa00240 Pyrimidine metabolism 2
osa01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 11
zma03018 RNA degradation 4
zma03008 Ribosome biogenesis in eukaryotes 2
zma03020 RNA polymerase 2
zma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 6
zma03010 Ribosome 3
zma03008 Ribosome biogenesis in eukaryotes 3
zma03018 RNA degradation 3
zma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03020 RNA polymerase 2
zma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 7
tae03420 Nucleotide excision repair 7
tae03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 8
tae03420 Nucleotide excision repair 8
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03060 Protein export 3
tae03020 RNA polymerase 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 3
hvu03010 Ribosome 3
hvu03020 RNA polymerase 3
hvu03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03420 Nucleotide excision repair 2
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 6
sbi03010 Ribosome 4
sbi03420 Nucleotide excision repair 3
sbi03020 RNA polymerase 2
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 3
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03020 RNA polymerase 2
bdi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03020 RNA polymerase 5
cre03008 Ribosome biogenesis in eukaryotes 4
cre03420 Nucleotide excision repair 3
cre03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100500450 100797078 25492856 11405864 18100279 7491904 837690 103871905 103836229 100267114 121210970 107909683 107886565 106366999 106362151 106449027 102624903 101251196 102596451 4351671 4349985 113633883 100286035 100281783 123102857 123111008 123079565 123396538 123409349 8076306 100822387 100828005 5719150
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