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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100527929   sm-like protein LSM5 
 gma-r.7   100527929   sm-like protein LSM5 
 mtr-u.5   25493392   sm-like protein LSM5 
 ppo-u.5   7463897   sm-like protein LSM5 
 ath-u.5   SAD1   Small nuclear ribonucleoprotein family protein 
 vvi-u.5   100264807   sm-like protein LSM5 
 sly-u.5   101256523   sm-like protein LSM5 
 osa-u.5   4338670   sm-like protein LSM5 
 zma-u.5   100286213   SAD1 
 zma-u.5   100283319   sm-like protein LSM5 

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Top 50 coexpressed genes to 100527929 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100527929 (gma-u.5 coexpression data)

CoexMap"100527929"


gmaLOC100527929 | Entrez gene ID : 100527929    
Species gma mtr ppo ath vvi sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 2 1 1 1 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx03018 [list] [network] RNA degradation (191 genes)
gmx03040 [list] [network] Spliceosome (466 genes)
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (282 genes)  IEA  
GO CC
GO:1990726 [list] [network] Lsm1-7-Pat1 complex  (11 genes)  IEA  
GO:0005688 [list] [network] U6 snRNP  (17 genes)  IEA  
GO:0046540 [list] [network] U4/U6 x U5 tri-snRNP complex  (45 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (2019 genes)  IEA  
Protein XP_003524792.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  extr 3,  chlo 2,  cyto_nucl 2,  cyto_pero 2,  cyto_E.R. 2,  cyto_plas 2  (predict for XP_003524792.1)
Subcellular
localization
TargetP
other 7  (predict for XP_003524792.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100527929
gma-r.7
for
100527929
mtr-u.5
for
25493392
ppo-u.5
for
7463897
ath-u.5
for
SAD1
vvi-u.5
for
100264807
sly-u.5
for
101256523
osa-u.5
for
4338670
zma-u.5
for
100286213
zma-u.5
for
100283319


Ortholog ID: 8191
Species gma mtr ppo ath bra bra vvi ghi ghi bna bna cit sly sot nta nta osa zma zma tae tae hvu sbi bdi
Symbol LOC100527929 LOC25493392 LOC7463897 SAD1 LOC103837268 LOC103854566 LOC100264807 LOC107955231 LOC107923065 LOC106363977 LOC106403204 LOC102627562 LOC101256523 LOC102579366 LOC107807746 LOC107824911 LOC4338670 LOC100286213 LOC100283319 LOC123181869 LOC123092587 LOC123439740 LOC8076844 LOC100837074
Function* sm-like protein LSM5 sm-like protein LSM5 sm-like protein LSM5 Small nuclear ribonucleoprotein family protein sm-like protein LSM5 sm-like protein LSM5 sm-like protein LSM5 sm-like protein LSM5 sm-like protein LSM5 sm-like protein LSM5 sm-like protein LSM5 sm-like protein LSM5 sm-like protein LSM5 sm-like protein LSM5 sm-like protein LSM5 sm-like protein LSM5 sm-like protein LSM5 SAD1 sm-like protein LSM5 sm-like protein LSM5 sm-like protein LSM5 sm-like protein LSM5 sm-like protein LSM5 sm-like protein LSM5
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma03015 mRNA surveillance pathway 2
gma04136 Autophagy - other 2
gma04382 Cornified envelope formation 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 11
mtr03020 RNA polymerase 2
mtr00510 N-Glycan biosynthesis 2
mtr00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 5
ppo00190 Oxidative phosphorylation 4
ppo03018 RNA degradation 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 11
ath03040 Spliceosome 4
ath03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 13
bra03040 Spliceosome 4
bra03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03018 RNA degradation 3
vvi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 10
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03010 Ribosome 4
ghi03018 RNA degradation 2
ghi00900 Terpenoid backbone biosynthesis 2
ghi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 4
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 4
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 4
cit03018 RNA degradation 3
cit03420 Nucleotide excision repair 3
cit03040 Spliceosome 3
cit03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 5
sly03018 RNA degradation 3
sly03020 RNA polymerase 2
sly03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 6
sot04120 Ubiquitin mediated proteolysis 2
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 9
nta03018 RNA degradation 5
nta03020 RNA polymerase 3
nta03420 Nucleotide excision repair 3
nta03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 6
nta03040 Spliceosome 5
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 11
osa03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 6
zma03010 Ribosome 6
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 5
zma03018 RNA degradation 2
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 4
tae03018 RNA degradation 3
tae03040 Spliceosome 3
tae03050 Proteasome 2
tae03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 7
tae03018 RNA degradation 3
tae03040 Spliceosome 3
tae03050 Proteasome 2
tae03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 8
sbi03040 Spliceosome 6
sbi03018 RNA degradation 3
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 7
bdi03040 Spliceosome 5
bdi03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100527929 25493392 7463897 834945 103837268 103854566 100264807 107955231 107923065 106363977 106403204 102627562 101256523 102579366 107807746 107824911 4338670 100286213 100283319 123181869 123092587 123439740 8076844 100837074
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