Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106428135   sm-like protein LSM5 
 bna-r.1   106363977   sm-like protein LSM5 
 bna-r.1   106403204   sm-like protein LSM5 
 bna-r.1   106382479   sm-like protein LSM5 
 bra-r.6   103854566   sm-like protein LSM5 
 bra-r.6   103837268   sm-like protein LSM5 
 ath-u.5   SAD1   Small nuclear ribonucleoprotein family protein 
 ghi-r.1   107923065   sm-like protein LSM5 
 ghi-r.1   107955231   sm-like protein LSM5 
 ghi-r.1   107954920   sm-like protein LSM5 
 cit-r.1   102627562   sm-like protein LSM5 
 gma-u.5   100527929   sm-like protein LSM5 
 vvi-u.5   100264807   sm-like protein LSM5 
 ppo-u.5   7463897   sm-like protein LSM5 
 mtr-u.5   25493392   sm-like protein LSM5 
 sly-u.5   101256523   sm-like protein LSM5 
 sot-r.1   102579366   sm-like protein LSM5 
 nta-r.1   107824911   sm-like protein LSM5 
 nta-r.1   107807746   sm-like protein LSM5 
 osa-u.5   4338670   sm-like protein LSM5 
 zma-u.5   100283319   sm-like protein LSM5 
 zma-u.5   100286213   SAD1 
 tae-r.2   123181869   sm-like protein LSM5 
 tae-r.2   123092587   sm-like protein LSM5 
 tae-r.2   123054276   sm-like protein LSM5 
 hvu-r.1   123439740   sm-like protein LSM5 
 sbi-r.1   8076844   sm-like protein LSM5 
 bdi-r.1   100837074   sm-like protein LSM5 

close


Top 50 coexpressed genes to 106428135 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to 106428135 (bna-r.1 coexpression data)

CoexMap"106428135"


bnaLOC106428135 | Entrez gene ID : 106428135    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 2 1 3 1 1 1 1 1 1 1 2 1 2 3 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03018 [list] [network] RNA degradation (380 genes)
bna03040 [list] [network] Spliceosome (912 genes)
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (548 genes)  IEA  
GO CC
GO:1990726 [list] [network] Lsm1-7-Pat1 complex  (27 genes)  IEA  
GO:0005688 [list] [network] U6 snRNP  (34 genes)  IEA  
GO:0046540 [list] [network] U4/U6 x U5 tri-snRNP complex  (91 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (3852 genes)  IEA  
Protein XP_013724335.1 [sequence] [blastp]
XP_048625619.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  extr 3,  cyto_E.R. 3  (predict for XP_013724335.1)
cyto 5,  extr 3,  cyto_E.R. 3  (predict for XP_048625619.1)
Subcellular
localization
TargetP
other 7  (predict for XP_013724335.1)
other 7  (predict for XP_048625619.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106428135
bna-r.1
for
106363977
bna-r.1
for
106403204
bna-r.1
for
106382479
bra-r.6
for
103854566
bra-r.6
for
103837268
ath-u.5
for
SAD1
ghi-r.1
for
107923065
ghi-r.1
for
107955231
ghi-r.1
for
107954920
cit-r.1
for
102627562
gma-u.5
for
100527929
vvi-u.5
for
100264807
ppo-u.5
for
7463897
mtr-u.5
for
25493392
sly-u.5
for
101256523
sot-r.1
for
102579366
nta-r.1
for
107824911
nta-r.1
for
107807746
osa-u.5
for
4338670
zma-u.5
for
100283319
zma-u.5
for
100286213
tae-r.2
for
123181869
tae-r.2
for
123092587
tae-r.2
for
123054276
hvu-r.1
for
123439740
sbi-r.1
for
8076844
bdi-r.1
for
100837074


Ortholog ID: 8191
Species bna bna bna bra bra ath ghi ghi ghi cit gma vvi ppo mtr sly sot nta nta osa zma zma tae tae tae hvu sbi bdi
Symbol LOC106363977 LOC106403204 LOC106382479 LOC103854566 LOC103837268 SAD1 LOC107923065 LOC107955231 LOC107912591 LOC102627562 LOC100527929 LOC100264807 LOC7463897 LOC25493392 LOC101256523 LOC102579366 LOC107824911 LOC107807746 LOC4338670 LOC100283319 LOC100286213 LOC123181869 LOC123092587 LOC123054276 LOC123439740 LOC8076844 LOC100837074
Function* sm-like protein LSM5 sm-like protein LSM5 sm-like protein LSM5 sm-like protein LSM5 sm-like protein LSM5 Small nuclear ribonucleoprotein family protein sm-like protein LSM5 sm-like protein LSM5 sm-like protein LSM5 sm-like protein LSM5 sm-like protein LSM5 sm-like protein LSM5 sm-like protein LSM5 sm-like protein LSM5 sm-like protein LSM5 sm-like protein LSM5 sm-like protein LSM5 sm-like protein LSM5 sm-like protein LSM5 sm-like protein LSM5 SAD1 sm-like protein LSM5 sm-like protein LSM5 sm-like protein LSM5 sm-like protein LSM5 sm-like protein LSM5 sm-like protein LSM5
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 4
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 4
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 4
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 13
bra03040 Spliceosome 4
bra03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 11
ath03040 Spliceosome 4
ath03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03010 Ribosome 4
ghi03018 RNA degradation 2
ghi00900 Terpenoid backbone biosynthesis 2
ghi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 10
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03010 Ribosome 4
ghi03018 RNA degradation 2
ghi00900 Terpenoid backbone biosynthesis 2
ghi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 4
cit03018 RNA degradation 3
cit03420 Nucleotide excision repair 3
cit03040 Spliceosome 3
cit03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma03015 mRNA surveillance pathway 2
gma04136 Autophagy - other 2
gma04382 Cornified envelope formation 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03018 RNA degradation 3
vvi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 5
ppo00190 Oxidative phosphorylation 4
ppo03018 RNA degradation 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 11
mtr03020 RNA polymerase 2
mtr00510 N-Glycan biosynthesis 2
mtr00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 5
sly03018 RNA degradation 3
sly03020 RNA polymerase 2
sly03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 6
sot04120 Ubiquitin mediated proteolysis 2
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 6
nta03040 Spliceosome 5
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 9
nta03018 RNA degradation 5
nta03020 RNA polymerase 3
nta03420 Nucleotide excision repair 3
nta03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 11
osa03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 5
zma03018 RNA degradation 2
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 6
zma03010 Ribosome 6
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 4
tae03018 RNA degradation 3
tae03040 Spliceosome 3
tae03050 Proteasome 2
tae03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 7
tae03018 RNA degradation 3
tae03040 Spliceosome 3
tae03050 Proteasome 2
tae03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 3
tae03440 Homologous recombination 3
tae03018 RNA degradation 3
tae03040 Spliceosome 3
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 8
sbi03040 Spliceosome 6
sbi03018 RNA degradation 3
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 7
bdi03040 Spliceosome 5
bdi03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106363977 106403204 106382479 103854566 103837268 834945 107923065 107955231 107912591 102627562 100527929 100264807 7463897 25493392 101256523 102579366 107824911 107807746 4338670 100283319 100286213 123181869 123092587 123054276 123439740 8076844 100837074
The preparation time of this page was 0.1 [sec].