Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8076844   sm-like protein LSM5 
 zma-u.5   100283319   sm-like protein LSM5 
 zma-u.5   100286213   SAD1 
 osa-u.5   4338670   sm-like protein LSM5 
 ath-u.5   SAD1   Small nuclear ribonucleoprotein family protein 
 gma-u.5   100527929   sm-like protein LSM5 
 sly-u.5   101256523   sm-like protein LSM5 
 vvi-u.5   100264807   sm-like protein LSM5 
 ppo-u.5   7463897   sm-like protein LSM5 
 mtr-u.5   25493392   sm-like protein LSM5 

close


Top 50 coexpressed genes to 8076844 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to 8076844 (sbi-r.1 coexpression data)

CoexMap"8076844"


sbiLOC8076844 | Entrez gene ID : 8076844    
Species sbi zma osa ath gma sly vvi ppo mtr bra nta cre hvu cit bdi sot tae bna ghi
Paralog 1 2 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sbi03018 [list] [network] RNA degradation (112 genes)
sbi03040 [list] [network] Spliceosome (208 genes)
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (170 genes)  IEA  
GO CC
GO:1990726 [list] [network] Lsm1-7-Pat1 complex  (6 genes)  IEA  
GO:0005688 [list] [network] U6 snRNP  (9 genes)  IEA  
GO:0046540 [list] [network] U4/U6 x U5 tri-snRNP complex  (31 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (1243 genes)  IEA  
Protein XP_002441037.1 [sequence] [blastp]
Subcellular
localization
wolf
extr 5,  chlo 2,  cyto 1,  chlo_mito 1  (predict for XP_002441037.1)
Subcellular
localization
TargetP
other 7  (predict for XP_002441037.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8076844

.
zma-u.5
for
100283319

.
zma-u.5
for
100286213

.
osa-u.5
for
4338670

.
ath-u.5
for
SAD1

.
gma-u.5
for
100527929

.
sly-u.5
for
101256523

.
vvi-u.5
for
100264807

.
ppo-u.5
for
7463897

.
mtr-u.5
for
25493392

.


Ortholog ID: 8191
Species ath gma sly osa zma zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol SAD1 LOC100527929 LOC101256523 LOC4338670 LOC100286213 LOC100283319 LOC103837268 LOC103854566 LOC100264807 LOC7463897 LOC25493392 LOC123181869 LOC123092587 LOC123439740 LOC107955231 LOC107923065 LOC106363977 LOC106403204 LOC8076844 LOC102579366 LOC102627562 LOC100837074 LOC107807746 LOC107824911
Function* Small nuclear ribonucleoprotein family protein sm-like protein LSM5 sm-like protein LSM5 sm-like protein LSM5 SAD1 sm-like protein LSM5 sm-like protein LSM5 sm-like protein LSM5 sm-like protein LSM5 sm-like protein LSM5 sm-like protein LSM5 sm-like protein LSM5 sm-like protein LSM5 sm-like protein LSM5 sm-like protein LSM5 sm-like protein LSM5 sm-like protein LSM5 sm-like protein LSM5 sm-like protein LSM5 sm-like protein LSM5 sm-like protein LSM5 sm-like protein LSM5 sm-like protein LSM5 sm-like protein LSM5
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 11
ath03040 Spliceosome 4
ath03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma03015 mRNA surveillance pathway 2
gma04136 Autophagy - other 2
gma04382 Cornified envelope formation 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 5
sly03018 RNA degradation 3
sly03020 RNA polymerase 2
sly03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 11
osa03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 6
zma03010 Ribosome 6
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 5
zma03018 RNA degradation 2
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 13
bra03040 Spliceosome 4
bra03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03018 RNA degradation 3
vvi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 5
ppo00190 Oxidative phosphorylation 4
ppo03018 RNA degradation 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 11
mtr03020 RNA polymerase 2
mtr00510 N-Glycan biosynthesis 2
mtr00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 4
tae03018 RNA degradation 3
tae03040 Spliceosome 3
tae03050 Proteasome 2
tae03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 7
tae03018 RNA degradation 3
tae03040 Spliceosome 3
tae03050 Proteasome 2
tae03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 10
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03010 Ribosome 4
ghi03018 RNA degradation 2
ghi00900 Terpenoid backbone biosynthesis 2
ghi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 4
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 4
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 8
sbi03040 Spliceosome 6
sbi03018 RNA degradation 3
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 6
sot04120 Ubiquitin mediated proteolysis 2
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 4
cit03018 RNA degradation 3
cit03420 Nucleotide excision repair 3
cit03040 Spliceosome 3
cit03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 7
bdi03040 Spliceosome 5
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 9
nta03018 RNA degradation 5
nta03020 RNA polymerase 3
nta03420 Nucleotide excision repair 3
nta03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 6
nta03040 Spliceosome 5
nta03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 834945 100527929 101256523 4338670 100286213 100283319 103837268 103854566 100264807 7463897 25493392 123181869 123092587 123439740 107955231 107923065 106363977 106403204 8076844 102579366 102627562 100837074 107807746 107824911
The preparation time of this page was 0.1 [sec].