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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100780196   exosome complex component RRP45A 
 gma-r.7   100780196   exosome complex component RRP45A 
 gma-m.5   100780196   exosome complex component RRP45A 
 gma-u.5   100802751   exosome complex component RRP45A 
 mtr-u.5   25483959   exosome complex component RRP45B 
 mtr-u.5   11441855   exosome complex component RRP45A 
 ppo-u.5   18102022   exosome complex component RRP45B 
 ppo-u.5   7467989   exosome complex component RRP45B 
 ath-u.5   RRP45a   ribonuclease PH45A 
 ath-u.5   CER7   3'-5'-exoribonuclease family protein 
 bra-r.6   103841899   exosome complex component RRP45A 
 bra-r.6   103830261   exosome complex component RRP45A 
 vvi-u.5   100265860   exosome complex component RRP45A 
 ghi-r.1   107889314   exosome complex component RRP45B 
 ghi-r.1   107891422   exosome complex component RRP45B 
 ghi-r.1   107924689   exosome complex component RRP45A 
 bna-r.1   106412182   exosome complex component RRP45A-like 
 bna-r.1   106412057   exosome complex component RRP45A 
 bna-r.1   106353114   exosome complex component RRP45A 
 cit-r.1   102626500   exosome complex component RRP45A-like 
 cit-r.1   102613621   exosome complex component RRP45A 
 sly-u.5   101263517   exosome complex component RRP45A 
 sot-r.1   102588839   protein RRP45A-like 
 nta-r.1   107832334   exosome complex component RRP45A 
 nta-r.1   107811570   exosome complex component RRP45A 
 osa-u.5   4329627   exosome complex component RRP45A 
 zma-u.5   100384304   uncharacterized LOC100384304 
 tae-r.2   123136496   exosome complex component RRP45A 
 tae-r.2   123132418   exosome complex component RRP45A 
 tae-r.2   123143992   exosome complex component RRP45A 
 hvu-r.1   123402057   exosome complex component RRP45A-like 
 hvu-r.1   123412118   exosome complex component RRP45A-like 
 sbi-r.1   110435026   exosome complex component RRP45A-like 
 bdi-r.1   100832261   exosome complex component RRP45A 
 cre-r.1   CHLRE_03g175000v5   uncharacterized protein 

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Top 50 coexpressed genes to 100780196 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100780196 (gma-u.5 coexpression data)

CoexMap"100780196"


gmaLOC100780196 | Entrez gene ID : 100780196      
Species gma mtr ppo ath bra vvi ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 2 2 2 2 1 3 3 2 1 1 2 1 1 3 2 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx03018 [list] [network] RNA degradation (191 genes)
GO BP
GO:0034473 [list] [network] U1 snRNA 3'-end processing  (8 genes)  IEA  
GO:0034476 [list] [network] U5 snRNA 3'-end processing  (8 genes)  IEA  
GO:0071042 [list] [network] nuclear polyadenylation-dependent mRNA catabolic process  (8 genes)  IEA  
GO:0071028 [list] [network] nuclear mRNA surveillance  (16 genes)  IEA  
GO:0071035 [list] [network] nuclear polyadenylation-dependent rRNA catabolic process  (17 genes)  IEA  
GO:0071038 [list] [network] TRAMP-dependent tRNA surveillance pathway  (17 genes)  IEA  
GO:0000467 [list] [network] exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (18 genes)  IEA  
GO:0034475 [list] [network] U4 snRNA 3'-end processing  (20 genes)  IEA  
GO CC
GO:0000177 [list] [network] cytoplasmic exosome (RNase complex)  (23 genes)  IEA  
GO:0000176 [list] [network] nuclear exosome (RNase complex)  (30 genes)  IEA  
GO MF
GO:0035925 [list] [network] mRNA 3'-UTR AU-rich region binding  (14 genes)  IEA  
Protein XP_003517524.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  chlo 1,  nucl 1,  mito 1,  plas 1,  nucl_plas 1,  mito_plas 1  (predict for XP_003517524.1)
Subcellular
localization
TargetP
other 5,  mito 5  (predict for XP_003517524.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100780196
gma-r.7
for
100780196
gma-m.5
for
100780196
gma-u.5
for
100802751
mtr-u.5
for
25483959
mtr-u.5
for
11441855
ppo-u.5
for
18102022
ppo-u.5
for
7467989
ath-u.5
for
RRP45a
ath-u.5
for
CER7
bra-r.6
for
103841899
bra-r.6
for
103830261
vvi-u.5
for
100265860
ghi-r.1
for
107889314
ghi-r.1
for
107891422
ghi-r.1
for
107924689
bna-r.1
for
106412182
bna-r.1
for
106412057
bna-r.1
for
106353114
cit-r.1
for
102626500
cit-r.1
for
102613621
sly-u.5
for
101263517
sot-r.1
for
102588839
nta-r.1
for
107832334
nta-r.1
for
107811570
osa-u.5
for
4329627
zma-u.5
for
100384304
tae-r.2
for
123136496
tae-r.2
for
123132418
tae-r.2
for
123143992
hvu-r.1
for
123402057
hvu-r.1
for
123412118
sbi-r.1
for
110435026
bdi-r.1
for
100832261
cre-r.1
for
CHLRE_03g175000v5


Ortholog ID: 5297
Species gma gma mtr mtr ppo ppo ath ath bra bra vvi ghi ghi ghi bna bna bna cit cit sly sot nta nta osa zma tae tae tae hvu hvu sbi bdi cre
Symbol LOC100780196 LOC100802751 LOC25483959 LOC11441855 LOC18102022 LOC7467989 RRP45a CER7 LOC103841899 LOC103830261 LOC100265860 LOC107889314 LOC107924689 LOC107950557 LOC106412182 LOC106412057 LOC106452577 LOC102626500 LOC102613621 LOC101263517 LOC102588839 LOC107832334 LOC107811570 LOC4329627 LOC100384304 LOC123132418 LOC123143992 LOC123163654 LOC123402057 LOC123412118 LOC110435026 LOC100832261 CHLRE_03g175000v5
Function* exosome complex component RRP45A exosome complex component RRP45A exosome complex component RRP45B exosome complex component RRP45A exosome complex component RRP45B exosome complex component RRP45B ribonuclease PH45A 3'-5'-exoribonuclease family protein exosome complex component RRP45A exosome complex component RRP45A exosome complex component RRP45A exosome complex component RRP45B exosome complex component RRP45A exosome complex component RRP45A exosome complex component RRP45A-like exosome complex component RRP45A exosome complex component RRP45A exosome complex component RRP45A-like exosome complex component RRP45A exosome complex component RRP45A protein RRP45A-like exosome complex component RRP45A exosome complex component RRP45A exosome complex component RRP45A uncharacterized LOC100384304 exosome complex component RRP45A exosome complex component RRP45A exosome complex component RRP45B exosome complex component RRP45A-like exosome complex component RRP45A-like exosome complex component RRP45A-like exosome complex component RRP45A uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
gma03018 RNA degradation 2
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 7
mtr03082 ATP-dependent chromatin remodeling 2
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 4
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04146 Peroxisome 3
ath03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
bra03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 3
bra03008 Ribosome biogenesis in eukaryotes 3
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 5
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 5
bna03018 RNA degradation 4
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 5
bna03018 RNA degradation 4
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 5
bna03018 RNA degradation 4
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 3
nta03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 6
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 6
zma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 7
tae03030 DNA replication 2
tae03410 Base excision repair 2
tae03420 Nucleotide excision repair 2
tae03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 7
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 8
tae03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 5
hvu03008 Ribosome biogenesis in eukaryotes 3
hvu04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 4
sbi03020 RNA polymerase 2
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 5
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100780196 100802751 25483959 11441855 18102022 7467989 820485 825221 103841899 103830261 100265860 107889314 107924689 107950557 106412182 106412057 106452577 102626500 102613621 101263517 102588839 107832334 107811570 4329627 100384304 123132418 123143992 123163654 123402057 123412118 110435026 100832261 5728873
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