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Orthologous genes in OrthoFinder**

Species Gene Description
 sot-r.1   102588839   protein RRP45A-like 
 sly-u.5   101263517   exosome complex component RRP45A 
 ath-u.5   RRP45a   ribonuclease PH45A 
 ath-u.5   CER7   3'-5'-exoribonuclease family protein 
 gma-u.5   100802751   exosome complex component RRP45A 
 gma-u.5   100780196   exosome complex component RRP45A 
 vvi-u.5   100265860   exosome complex component RRP45A 
 ppo-u.5   7467989   exosome complex component RRP45B 
 ppo-u.5   18102022   exosome complex component RRP45B 
 mtr-u.5   25483959   exosome complex component RRP45B 
 mtr-u.5   11441855   exosome complex component RRP45A 
 osa-u.5   4329627   exosome complex component RRP45A 
 zma-u.5   100384304   uncharacterized LOC100384304 

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Top 50 coexpressed genes to 102588839 (sot-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 102588839 (sot-r.1 coexpression data)

CoexMap"102588839"


sotLOC102588839 | Entrez gene ID : 102588839    
Species sot sly ath gma vvi ppo mtr osa zma cre ghi cit hvu bdi bra sbi tae nta bna
Paralog 1 1 2 2 1 2 2 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sot03018 [list] [network] RNA degradation (117 genes)
GO BP
GO:0034473 [list] [network] U1 snRNA 3'-end processing  (4 genes)  IEA  
GO:0034476 [list] [network] U5 snRNA 3'-end processing  (4 genes)  IEA  
GO:0071028 [list] [network] nuclear mRNA surveillance  (7 genes)  IEA  
GO:0000467 [list] [network] exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (8 genes)  IEA  
GO:0071035 [list] [network] nuclear polyadenylation-dependent rRNA catabolic process  (8 genes)  IEA  
GO:0071038 [list] [network] TRAMP-dependent tRNA surveillance pathway  (8 genes)  IEA  
GO:0016075 [list] [network] rRNA catabolic process  (9 genes)  IEA  
GO:0034475 [list] [network] U4 snRNA 3'-end processing  (9 genes)  IEA  
GO:0000288 [list] [network] nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay  (24 genes)  IEA  
GO CC
GO:0000177 [list] [network] cytoplasmic exosome (RNase complex)  (9 genes)  IEA  
GO:0000176 [list] [network] nuclear exosome (RNase complex)  (12 genes)  IEA  
GO MF
GO:0035925 [list] [network] mRNA 3'-UTR AU-rich region binding  (5 genes)  IEA  
Protein XP_006360660.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  cyto_nucl 3,  chlo 2,  nucl 1,  mito 1,  plas 1,  golg 1,  golg_plas 1,  mito_plas 1  (predict for XP_006360660.1)
Subcellular
localization
TargetP
other 7  (predict for XP_006360660.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sot-r.1
for
102588839

.
sly-u.5
for
101263517

.
ath-u.5
for
RRP45a

.
ath-u.5
for
CER7

.
gma-u.5
for
100802751

.
gma-u.5
for
100780196

.
vvi-u.5
for
100265860

.
ppo-u.5
for
7467989

.
ppo-u.5
for
18102022

.
mtr-u.5
for
25483959

.
mtr-u.5
for
11441855

.
osa-u.5
for
4329627

.
zma-u.5
for
100384304

.


Ortholog ID: 5297
Species ath ath gma gma sly osa zma bra bra vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sot cit cit bdi nta nta
Symbol RRP45a CER7 LOC100780196 LOC100802751 LOC101263517 LOC4329627 LOC100384304 LOC103841899 LOC103830261 LOC100265860 LOC18102022 LOC7467989 LOC25483959 LOC11441855 LOC123132418 LOC123163654 LOC123402057 LOC123412118 LOC107889314 LOC107924689 LOC106412057 LOC106452577 CHLRE_03g175000v5 LOC110435026 LOC102588839 LOC102613621 LOC102626500 LOC100832261 LOC107832334 LOC107811570
Function* ribonuclease PH45A 3'-5'-exoribonuclease family protein exosome complex component RRP45A exosome complex component RRP45A exosome complex component RRP45A exosome complex component RRP45A uncharacterized LOC100384304 exosome complex component RRP45A exosome complex component RRP45A exosome complex component RRP45A exosome complex component RRP45B exosome complex component RRP45B exosome complex component RRP45B exosome complex component RRP45A exosome complex component RRP45A exosome complex component RRP45B exosome complex component RRP45A-like exosome complex component RRP45A-like exosome complex component RRP45B exosome complex component RRP45A exosome complex component RRP45A exosome complex component RRP45A uncharacterized protein exosome complex component RRP45A-like protein RRP45A-like exosome complex component RRP45A exosome complex component RRP45A-like exosome complex component RRP45A exosome complex component RRP45A exosome complex component RRP45A
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04146 Peroxisome 3
ath03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
gma03018 RNA degradation 2
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 6
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 6
zma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
bra03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 3
bra03008 Ribosome biogenesis in eukaryotes 3
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 7
mtr03082 ATP-dependent chromatin remodeling 2
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 4
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 7
tae03030 DNA replication 2
tae03410 Base excision repair 2
tae03420 Nucleotide excision repair 2
tae03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 8
tae03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 5
hvu03008 Ribosome biogenesis in eukaryotes 3
hvu04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 5
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 5
bna03018 RNA degradation 4
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 5
bna03018 RNA degradation 4
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 4
sbi03020 RNA polymerase 2
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 5
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 3
nta03018 RNA degradation 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820485 825221 100780196 100802751 101263517 4329627 100384304 103841899 103830261 100265860 18102022 7467989 25483959 11441855 123132418 123163654 123402057 123412118 107889314 107924689 106412057 106452577 5728873 110435026 102588839 102613621 102626500 100832261 107832334 107811570
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