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Orthologous genes in OrthoFinder**

Species Gene Description
 mtr-u.5   11441855   exosome complex component RRP45A 
 mtr-r.5   11441855   exosome complex component RRP45A 
 mtr-m.5   11441855   exosome complex component RRP45A 
 mtr-u.5   25483959   exosome complex component RRP45B 
 gma-u.5   100802751   exosome complex component RRP45A 
 gma-u.5   100780196   exosome complex component RRP45A 
 ppo-u.5   7467989   exosome complex component RRP45B 
 ppo-u.5   18102022   exosome complex component RRP45B 
 ath-u.5   RRP45a   ribonuclease PH45A 
 ath-u.5   CER7   3'-5'-exoribonuclease family protein 
 vvi-u.5   100265860   exosome complex component RRP45A 
 sly-u.5   101263517   exosome complex component RRP45A 
 osa-u.5   4329627   exosome complex component RRP45A 
 zma-u.5   100384304   uncharacterized LOC100384304 

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Top 50 coexpressed genes to 11441855 (mtr-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 11441855 (mtr-u.5 coexpression data)

CoexMap"11441855"


mtrLOC11441855 | Entrez gene ID : 11441855      
Species mtr gma ppo ath vvi sly osa zma hvu bna cit bra ghi sbi bdi nta tae cre sot
Paralog 4 2 2 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG mtr03018 [list] [network] RNA degradation (117 genes)
GO BP
GO:0034473 [list] [network] U1 snRNA 3'-end processing  (5 genes)  IEA  
GO:0034476 [list] [network] U5 snRNA 3'-end processing  (5 genes)  IEA  
GO:0000467 [list] [network] exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (11 genes)  IEA  
GO:0071028 [list] [network] nuclear mRNA surveillance  (11 genes)  IEA  
GO:0016075 [list] [network] rRNA catabolic process  (12 genes)  IEA  
GO:0034475 [list] [network] U4 snRNA 3'-end processing  (12 genes)  IEA  
GO:0071035 [list] [network] nuclear polyadenylation-dependent rRNA catabolic process  (12 genes)  IEA  
GO:0071038 [list] [network] TRAMP-dependent tRNA surveillance pathway  (12 genes)  IEA  
GO:0000288 [list] [network] nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay  (17 genes)  IEA  
GO CC
GO:0000177 [list] [network] cytoplasmic exosome (RNase complex)  (13 genes)  IEA  
GO:0000176 [list] [network] nuclear exosome (RNase complex)  (17 genes)  IEA  
GO MF
GO:0035925 [list] [network] mRNA 3'-UTR AU-rich region binding  (6 genes)  IEA  
Protein XP_003593906.1 [sequence] [blastp]
XP_039686234.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 3,  cyto 3,  nucl 2,  chlo_mito 2  (predict for XP_003593906.1)
chlo 3,  cyto 3,  nucl 2,  chlo_mito 2  (predict for XP_039686234.1)
Subcellular
localization
TargetP
other 5  (predict for XP_003593906.1)
other 5  (predict for XP_039686234.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

mtr-u.5
for
11441855
mtr-r.5
for
11441855
mtr-m.5
for
11441855
mtr-u.5
for
25483959
gma-u.5
for
100802751
gma-u.5
for
100780196
ppo-u.5
for
7467989
ppo-u.5
for
18102022
ath-u.5
for
RRP45a
ath-u.5
for
CER7
vvi-u.5
for
100265860
sly-u.5
for
101263517
osa-u.5
for
4329627
zma-u.5
for
100384304


Ortholog ID: 5297
Species mtr mtr gma gma ppo ppo ath ath bra bra vvi ghi ghi bna bna cit cit sly sot nta nta osa zma tae tae hvu hvu sbi bdi cre
Symbol LOC25483959 LOC11441855 LOC100780196 LOC100802751 LOC18102022 LOC7467989 RRP45a CER7 LOC103841899 LOC103830261 LOC100265860 LOC107889314 LOC107924689 LOC106412057 LOC106452577 LOC102613621 LOC102626500 LOC101263517 LOC102588839 LOC107832334 LOC107811570 LOC4329627 LOC100384304 LOC123132418 LOC123163654 LOC123402057 LOC123412118 LOC110435026 LOC100832261 CHLRE_03g175000v5
Function* exosome complex component RRP45B exosome complex component RRP45A exosome complex component RRP45A exosome complex component RRP45A exosome complex component RRP45B exosome complex component RRP45B ribonuclease PH45A 3'-5'-exoribonuclease family protein exosome complex component RRP45A exosome complex component RRP45A exosome complex component RRP45A exosome complex component RRP45B exosome complex component RRP45A exosome complex component RRP45A exosome complex component RRP45A exosome complex component RRP45A exosome complex component RRP45A-like exosome complex component RRP45A protein RRP45A-like exosome complex component RRP45A exosome complex component RRP45A exosome complex component RRP45A uncharacterized LOC100384304 exosome complex component RRP45A exosome complex component RRP45B exosome complex component RRP45A-like exosome complex component RRP45A-like exosome complex component RRP45A-like exosome complex component RRP45A uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 7
mtr03082 ATP-dependent chromatin remodeling 2
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 4
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
gma03018 RNA degradation 2
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04146 Peroxisome 3
ath03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
bra03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 3
bra03008 Ribosome biogenesis in eukaryotes 3
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 5
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 5
bna03018 RNA degradation 4
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 5
bna03018 RNA degradation 4
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 3
nta03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 6
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 6
zma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 7
tae03030 DNA replication 2
tae03410 Base excision repair 2
tae03420 Nucleotide excision repair 2
tae03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 8
tae03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 5
hvu03008 Ribosome biogenesis in eukaryotes 3
hvu04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 4
sbi03020 RNA polymerase 2
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 5
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 25483959 11441855 100780196 100802751 18102022 7467989 820485 825221 103841899 103830261 100265860 107889314 107924689 106412057 106452577 102613621 102626500 101263517 102588839 107832334 107811570 4329627 100384304 123132418 123163654 123402057 123412118 110435026 100832261 5728873
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