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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100784916   putative transcription elongation factor SPT5 homolog 1 
 gma-r.7   100784916   putative transcription elongation factor SPT5 homolog 1 
 gma-u.5   100801380   putative transcription elongation factor SPT5 homolog 1 
 mtr-u.5   11433805   putative transcription elongation factor SPT5 homolog 1 
 ppo-u.5   7494297   putative transcription elongation factor SPT5 homolog 1 
 ppo-u.5   7470029   putative transcription elongation factor SPT5 homolog 1 
 ath-u.5   GTA2   global transcription factor group A2 
 vvi-u.5   100267652   putative transcription elongation factor SPT5 homolog 1 
 sly-u.5   101260813   putative transcription elongation factor SPT5 homolog 1 
 osa-u.5   4340446   putative transcription elongation factor SPT5 homolog 1 
 zma-u.5   103637903   putative transcription elongation factor SPT5 homolog 1 
 zma-u.5   103631336   putative transcription elongation factor SPT5 homolog 1 

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Top 50 coexpressed genes to 100784916 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100784916 (gma-u.5 coexpression data)

CoexMap"100784916"


gmaLOC100784916 | Entrez gene ID : 100784916      
Species gma mtr ppo ath vvi sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 3 1 2 1 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx03250 [list] [network] Viral life cycle - HIV-1 (58 genes)
GO BP
GO:0140673 [list] [network] transcription elongation-coupled chromatin remodeling  (9 genes)  IEA  
GO:0006368 [list] [network] transcription elongation by RNA polymerase II  (35 genes)  IEA  
GO:0032784 [list] [network] regulation of DNA-templated transcription elongation  (67 genes)  IEA  
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (844 genes)  IEA  
GO:0006412 [list] [network] translation  (852 genes)  IEA  
GO CC
GO:0032044 [list] [network] DSIF complex  (7 genes)  IEA  
GO:0005840 [list] [network] ribosome  (633 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (563 genes)  IEA  
GO:0003735 [list] [network] structural constituent of ribosome  (610 genes)  IEA  
Protein XP_003523402.1 [sequence] [blastp]
XP_006578943.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 7,  chlo 1,  pero 1,  cysk 1,  chlo_mito 1  (predict for XP_003523402.1)
cyto 7,  chlo 1,  pero 1,  cysk 1,  chlo_mito 1  (predict for XP_006578943.1)
Subcellular
localization
TargetP
other 9  (predict for XP_003523402.1)
other 9  (predict for XP_006578943.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100784916
gma-r.7
for
100784916
gma-u.5
for
100801380
mtr-u.5
for
11433805
ppo-u.5
for
7494297
ppo-u.5
for
7470029
ath-u.5
for
GTA2
vvi-u.5
for
100267652
sly-u.5
for
101260813
osa-u.5
for
4340446
zma-u.5
for
103637903
zma-u.5
for
103631336


Ortholog ID: 4529
Species gma gma mtr ppo ppo ath bra bra vvi ghi ghi bna bna cit sly sot nta nta osa zma zma hvu sbi bdi cre
Symbol LOC100784916 LOC100801380 LOC11433805 LOC7494297 LOC7470029 GTA2 LOC103858471 LOC103857524 LOC100267652 LOC107910424 LOC107897119 LOC106437814 LOC106402752 LOC102615782 LOC101260813 LOC102598650 LOC107759904 LOC107794764 LOC4340446 LOC103637903 LOC103631336 LOC123410926 LOC8077336 LOC100829683 CHLRE_01g031050v5
Function* putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 1 global transcription factor group A2 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 2 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 2 putative transcription elongation factor SPT5 homolog 2 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 6
gma03250 Viral life cycle - HIV-1 2
gma00270 Cysteine and methionine metabolism 2
gma04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma03250 Viral life cycle - HIV-1 3
gma03082 ATP-dependent chromatin remodeling 2
gma00270 Cysteine and methionine metabolism 2
gma04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
ppo03250 Viral life cycle - HIV-1 2
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03250 Viral life cycle - HIV-1 3
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath03013 Nucleocytoplasmic transport 2
ath03015 mRNA surveillance pathway 2
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 4
bra03040 Spliceosome 4
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00460 Cyanoamino acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03250 Viral life cycle - HIV-1 6
ghi04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03250 Viral life cycle - HIV-1 6
ghi03013 Nucleocytoplasmic transport 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
cit03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03250 Viral life cycle - HIV-1 3
nta00270 Cysteine and methionine metabolism 2
nta04148 Efferocytosis 2
nta03040 Spliceosome 2
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03250 Viral life cycle - HIV-1 3
nta00270 Cysteine and methionine metabolism 2
nta04148 Efferocytosis 2
nta03040 Spliceosome 2
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04148 Efferocytosis 2
osa03040 Spliceosome 2
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
zma03082 ATP-dependent chromatin remodeling 2
zma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 4
zma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 3
sbi03013 Nucleocytoplasmic transport 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 4
cre03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100784916 100801380 11433805 7494297 7470029 826391 103858471 103857524 100267652 107910424 107897119 106437814 106402752 102615782 101260813 102598650 107759904 107794764 4340446 103637903 103631336 123410926 8077336 100829683 5715378
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