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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107952018   putative transcription elongation factor SPT5 homolog 1 
 ghi-r.1   121229053   putative transcription elongation factor SPT5 homolog 1 
 ghi-r.1   107914125   putative transcription elongation factor SPT5 homolog 1 
 ghi-r.1   107910424   putative transcription elongation factor SPT5 homolog 1 
 ath-u.5   GTA2   global transcription factor group A2 
 bra-r.6   108868804   putative transcription elongation factor SPT5 homolog 1 
 bra-r.6   103858471   putative transcription elongation factor SPT5 homolog 1 
 bra-r.6   103857524   putative transcription elongation factor SPT5 homolog 2 
 bna-r.1   106402752   putative transcription elongation factor SPT5 homolog 2 
 bna-r.1   106388451   putative transcription elongation factor SPT5 homolog 1 
 bna-r.1   106437814   putative transcription elongation factor SPT5 homolog 2 
 cit-r.1   102615782   putative transcription elongation factor SPT5 homolog 1 
 gma-u.5   100801380   putative transcription elongation factor SPT5 homolog 1 
 gma-u.5   100784916   putative transcription elongation factor SPT5 homolog 1 
 vvi-u.5   100267652   putative transcription elongation factor SPT5 homolog 1 
 ppo-u.5   7470029   putative transcription elongation factor SPT5 homolog 1 
 ppo-u.5   7494297   putative transcription elongation factor SPT5 homolog 1 
 mtr-u.5   11433805   putative transcription elongation factor SPT5 homolog 1 
 sly-u.5   101260813   putative transcription elongation factor SPT5 homolog 1 
 sot-r.1   102598650   putative transcription elongation factor SPT5 homolog 1 
 nta-r.1   107759904   putative transcription elongation factor SPT5 homolog 1 
 nta-r.1   107770981   putative transcription elongation factor SPT5 homolog 1 
 nta-r.1   107794764   putative transcription elongation factor SPT5 homolog 1 
 osa-u.5   4340446   putative transcription elongation factor SPT5 homolog 1 
 zma-u.5   103637903   putative transcription elongation factor SPT5 homolog 1 
 zma-u.5   103631336   putative transcription elongation factor SPT5 homolog 1 
 tae-r.2   123154918   putative transcription elongation factor SPT5 homolog 1 
 tae-r.2   123128524   putative transcription elongation factor SPT5 homolog 1 
 hvu-r.1   123410926   putative transcription elongation factor SPT5 homolog 1 
 sbi-r.1   8077336   putative transcription elongation factor SPT5 homolog 1 
 bdi-r.1   100829683   putative transcription elongation factor SPT5 homolog 1 
 cre-r.1   CHLRE_01g031050v5   uncharacterized protein 

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Top 50 coexpressed genes to 107952018 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107952018 (ghi-r.1 coexpression data)

CoexMap"107952018"


ghiLOC107952018 | Entrez gene ID : 107952018    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 1 3 3 1 2 1 2 1 1 1 3 1 2 2 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi03250 [list] [network] Viral life cycle - HIV-1 (90 genes)
GO BP
GO:0140673 [list] [network] transcription elongation-coupled chromatin remodeling  (22 genes)  IEA  
GO:0006368 [list] [network] transcription elongation by RNA polymerase II  (65 genes)  IEA  
GO:0032784 [list] [network] regulation of DNA-templated transcription elongation  (89 genes)  IEA  
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (1121 genes)  IEA  
GO:0006412 [list] [network] translation  (1487 genes)  IEA  
GO CC
GO:0032044 [list] [network] DSIF complex  (12 genes)  IEA  
GO:0005840 [list] [network] ribosome  (1110 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (890 genes)  IEA  
GO:0003735 [list] [network] structural constituent of ribosome  (1075 genes)  IEA  
Protein XP_016742744.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  chlo 3  (predict for XP_016742744.1)
Subcellular
localization
TargetP
other 9  (predict for XP_016742744.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107952018
ghi-r.1
for
121229053
ghi-r.1
for
107914125
ghi-r.1
for
107910424
ath-u.5
for
GTA2
bra-r.6
for
108868804
bra-r.6
for
103858471
bra-r.6
for
103857524
bna-r.1
for
106402752
bna-r.1
for
106388451
bna-r.1
for
106437814
cit-r.1
for
102615782
gma-u.5
for
100801380
gma-u.5
for
100784916
vvi-u.5
for
100267652
ppo-u.5
for
7470029
ppo-u.5
for
7494297
mtr-u.5
for
11433805
sly-u.5
for
101260813
sot-r.1
for
102598650
nta-r.1
for
107759904
nta-r.1
for
107770981
nta-r.1
for
107794764
osa-u.5
for
4340446
zma-u.5
for
103637903
zma-u.5
for
103631336
tae-r.2
for
123154918
tae-r.2
for
123128524
hvu-r.1
for
123410926
sbi-r.1
for
8077336
bdi-r.1
for
100829683
cre-r.1
for
CHLRE_01g031050v5


Ortholog ID: 4529
Species ghi ghi ghi ath bra bra bra bna bna bna cit gma gma vvi ppo ppo mtr sly sot nta nta nta osa zma zma tae hvu sbi bdi cre
Symbol LOC107914125 LOC107910424 LOC107897119 GTA2 LOC108868804 LOC103858471 LOC103857524 LOC106402752 LOC106437814 LOC106388439 LOC102615782 LOC100801380 LOC100784916 LOC100267652 LOC7470029 LOC7494297 LOC11433805 LOC101260813 LOC102598650 LOC107759904 LOC107770981 LOC107794764 LOC4340446 LOC103637903 LOC103631336 LOC123162823 LOC123410926 LOC8077336 LOC100829683 CHLRE_01g031050v5
Function* putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 1 global transcription factor group A2 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 2 putative transcription elongation factor SPT5 homolog 2 putative transcription elongation factor SPT5 homolog 2 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03250 Viral life cycle - HIV-1 6
ghi04130 SNARE interactions in vesicular transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03250 Viral life cycle - HIV-1 6
ghi04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03250 Viral life cycle - HIV-1 6
ghi03013 Nucleocytoplasmic transport 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath03013 Nucleocytoplasmic transport 2
ath03015 mRNA surveillance pathway 2
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 4
bra03040 Spliceosome 4
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00460 Cyanoamino acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
cit03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma03250 Viral life cycle - HIV-1 3
gma03082 ATP-dependent chromatin remodeling 2
gma00270 Cysteine and methionine metabolism 2
gma04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 6
gma03250 Viral life cycle - HIV-1 2
gma00270 Cysteine and methionine metabolism 2
gma04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03250 Viral life cycle - HIV-1 3
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
ppo03250 Viral life cycle - HIV-1 2
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03250 Viral life cycle - HIV-1 3
nta00270 Cysteine and methionine metabolism 2
nta04148 Efferocytosis 2
nta03040 Spliceosome 2
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03250 Viral life cycle - HIV-1 3
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03250 Viral life cycle - HIV-1 3
nta00270 Cysteine and methionine metabolism 2
nta04148 Efferocytosis 2
nta03040 Spliceosome 2
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04148 Efferocytosis 2
osa03040 Spliceosome 2
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
zma03082 ATP-dependent chromatin remodeling 2
zma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 4
zma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03250 Viral life cycle - HIV-1 3
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 3
sbi03013 Nucleocytoplasmic transport 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 4
cre03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107914125 107910424 107897119 826391 108868804 103858471 103857524 106402752 106437814 106388439 102615782 100801380 100784916 100267652 7470029 7494297 11433805 101260813 102598650 107759904 107770981 107794764 4340446 103637903 103631336 123162823 123410926 8077336 100829683 5715378
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