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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106437814   putative transcription elongation factor SPT5 homolog 2 
 ath-u.5   GTA2   global transcription factor group A2 
 gma-u.5   100801380   putative transcription elongation factor SPT5 homolog 1 
 gma-u.5   100784916   putative transcription elongation factor SPT5 homolog 1 
 vvi-u.5   100267652   putative transcription elongation factor SPT5 homolog 1 
 ppo-u.5   7470029   putative transcription elongation factor SPT5 homolog 1 
 ppo-u.5   7494297   putative transcription elongation factor SPT5 homolog 1 
 mtr-u.5   11433805   putative transcription elongation factor SPT5 homolog 1 
 sly-u.5   101260813   putative transcription elongation factor SPT5 homolog 1 
 osa-u.5   4340446   putative transcription elongation factor SPT5 homolog 1 
 zma-u.5   103637903   putative transcription elongation factor SPT5 homolog 1 
 zma-u.5   103631336   putative transcription elongation factor SPT5 homolog 1 

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Top 50 coexpressed genes to 106437814 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106437814 (bna-r.1 coexpression data)

CoexMap"106437814"


bnaLOC106437814 | Entrez gene ID : 106437814    
Species bna ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae ghi
Paralog 1 1 2 1 2 1 1 1 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03250 [list] [network] Viral life cycle - HIV-1 (118 genes)
GO BP
GO:0140673 [list] [network] transcription elongation-coupled chromatin remodeling  (13 genes)  IEA  
GO:0006368 [list] [network] transcription elongation by RNA polymerase II  (46 genes)  IEA  
GO:0032784 [list] [network] regulation of DNA-templated transcription elongation  (133 genes)  IEA  
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (1371 genes)  IEA  
GO:0006412 [list] [network] translation  (1842 genes)  IEA  
GO CC
GO:0032044 [list] [network] DSIF complex  (13 genes)  IEA  
GO:0005840 [list] [network] ribosome  (1367 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (918 genes)  IEA  
GO:0003735 [list] [network] structural constituent of ribosome  (1340 genes)  IEA  
Protein XP_013734255.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto_nucl 4,  cyto 1,  chlo 1,  plas 1,  cysk 1,  cysk_plas 1  (predict for XP_013734255.1)
Subcellular
localization
TargetP
other 9  (predict for XP_013734255.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106437814

.
ath-u.5
for
GTA2

.
gma-u.5
for
100801380

.
gma-u.5
for
100784916

.
vvi-u.5
for
100267652

.
ppo-u.5
for
7470029

.
ppo-u.5
for
7494297

.
mtr-u.5
for
11433805

.
sly-u.5
for
101260813

.
osa-u.5
for
4340446

.
zma-u.5
for
103637903

.
zma-u.5
for
103631336

.


Ortholog ID: 4529
Species ath gma gma sly osa zma zma bra bra vvi ppo ppo mtr hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol GTA2 LOC100784916 LOC100801380 LOC101260813 LOC4340446 LOC103637903 LOC103631336 LOC103858471 LOC103857524 LOC100267652 LOC7494297 LOC7470029 LOC11433805 LOC123410926 LOC107910424 LOC107897119 LOC106437814 LOC106402752 CHLRE_01g031050v5 LOC8077336 LOC102598650 LOC102615782 LOC100829683 LOC107759904 LOC107794764
Function* global transcription factor group A2 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 2 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 2 putative transcription elongation factor SPT5 homolog 2 uncharacterized protein putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 1 putative transcription elongation factor SPT5 homolog 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath03013 Nucleocytoplasmic transport 2
ath03015 mRNA surveillance pathway 2
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 6
gma03250 Viral life cycle - HIV-1 2
gma00270 Cysteine and methionine metabolism 2
gma04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma03250 Viral life cycle - HIV-1 3
gma03082 ATP-dependent chromatin remodeling 2
gma00270 Cysteine and methionine metabolism 2
gma04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04148 Efferocytosis 2
osa03040 Spliceosome 2
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
zma03082 ATP-dependent chromatin remodeling 2
zma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 4
zma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 4
bra03040 Spliceosome 4
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00460 Cyanoamino acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
ppo03250 Viral life cycle - HIV-1 2
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03250 Viral life cycle - HIV-1 3
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03250 Viral life cycle - HIV-1 6
ghi04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03250 Viral life cycle - HIV-1 6
ghi03013 Nucleocytoplasmic transport 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 4
cre03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 3
sbi03013 Nucleocytoplasmic transport 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
cit03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03250 Viral life cycle - HIV-1 3
nta00270 Cysteine and methionine metabolism 2
nta04148 Efferocytosis 2
nta03040 Spliceosome 2
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03250 Viral life cycle - HIV-1 3
nta00270 Cysteine and methionine metabolism 2
nta04148 Efferocytosis 2
nta03040 Spliceosome 2
nta03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 826391 100784916 100801380 101260813 4340446 103637903 103631336 103858471 103857524 100267652 7494297 7470029 11433805 123410926 107910424 107897119 106437814 106402752 5715378 8077336 102598650 102615782 100829683 107759904 107794764
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