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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100785430   probable polyribonucleotide nucleotidyltransferase 1, chloroplastic 
 gma-r.7   100785430   probable polyribonucleotide nucleotidyltransferase 1, chloroplastic 
 gma-m.5   100785430   probable polyribonucleotide nucleotidyltransferase 1, chloroplastic 
 gma-u.5   100819741   polyribonucleotide nucleotidyltransferase 1, chloroplastic 
 mtr-u.5   11438450   probable polyribonucleotide nucleotidyltransferase 1, chloroplastic 
 ppo-u.5   7482382   probable polyribonucleotide nucleotidyltransferase 1, chloroplastic 
 ppo-u.5   7491063   probable polyribonucleotide nucleotidyltransferase 1, chloroplastic 
 ath-u.5   RIF10   polyribonucleotide nucleotidyltransferase 
 vvi-u.5   100265692   probable polyribonucleotide nucleotidyltransferase 1, chloroplastic 
 sly-u.5   101245783   probable polyribonucleotide nucleotidyltransferase 1, chloroplastic 
 osa-u.5   4342497   probable polyribonucleotide nucleotidyltransferase 1, chloroplastic 
 zma-u.5   103631988   probable polyribonucleotide nucleotidyltransferase 1, chloroplastic 

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Top 50 coexpressed genes to 100785430 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100785430 (gma-u.5 coexpression data)

CoexMap"100785430"


gmaLOC100785430 | Entrez gene ID : 100785430    
Species gma mtr ppo ath vvi sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 4 1 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx03018 [list] [network] RNA degradation (191 genes)
GO BP
GO:0000958 [list] [network] mitochondrial mRNA catabolic process  (5 genes)  IEA  
GO:0000965 [list] [network] mitochondrial RNA 3'-end processing  (11 genes)  IEA  
GO CC
GO:0009570 [list] [network] chloroplast stroma  (198 genes)  IEA  
GO:0005739 [list] [network] mitochondrion  (1058 genes)  IEA  
GO:0005829 [list] [network] cytosol  (1702 genes)  IEA  
GO MF
GO:0004654 [list] [network] polyribonucleotide nucleotidyltransferase activity  (5 genes)  IEA  
GO:0000175 [list] [network] 3'-5'-RNA exonuclease activity  (50 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (2019 genes)  IEA  
Protein XP_014627189.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  chlo_mito 5  (predict for XP_014627189.2)
Subcellular
localization
TargetP
chlo 9  (predict for XP_014627189.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100785430
gma-r.7
for
100785430
gma-m.5
for
100785430
gma-u.5
for
100819741
mtr-u.5
for
11438450
ppo-u.5
for
7482382
ppo-u.5
for
7491063
ath-u.5
for
RIF10
vvi-u.5
for
100265692
sly-u.5
for
101245783
osa-u.5
for
4342497
zma-u.5
for
103631988


Ortholog ID: 7577
Species gma gma mtr ppo ppo ath bra bra vvi ghi ghi bna bna cit sly sot nta nta osa zma tae tae hvu sbi bdi cre
Symbol LOC100785430 LOC100819741 LOC11438450 LOC7482382 LOC7491063 RIF10 LOC103859008 LOC103855181 LOC100265692 LOC107913610 LOC107891187 LOC106438964 LOC125587865 LOC102615727 LOC101245783 LOC102599047 LOC107808053 LOC107782252 LOC4342497 LOC103631988 LOC123188625 LOC123044832 LOC123426165 LOC8060701 LOC100824934 CHLRE_04g214501v5
Function* probable polyribonucleotide nucleotidyltransferase 1, chloroplastic polyribonucleotide nucleotidyltransferase 1, chloroplastic probable polyribonucleotide nucleotidyltransferase 1, chloroplastic probable polyribonucleotide nucleotidyltransferase 1, chloroplastic probable polyribonucleotide nucleotidyltransferase 1, chloroplastic polyribonucleotide nucleotidyltransferase polyribonucleotide nucleotidyltransferase 1, chloroplastic polyribonucleotide nucleotidyltransferase 1, chloroplastic probable polyribonucleotide nucleotidyltransferase 1, chloroplastic polyribonucleotide nucleotidyltransferase 1, chloroplastic probable polyribonucleotide nucleotidyltransferase 1, chloroplastic polyribonucleotide nucleotidyltransferase 1, chloroplastic-like polyribonucleotide nucleotidyltransferase 1, chloroplastic-like polyribonucleotide nucleotidyltransferase 1, chloroplastic probable polyribonucleotide nucleotidyltransferase 1, chloroplastic probable polyribonucleotide nucleotidyltransferase 1, chloroplastic putative polyribonucleotide nucleotidyltransferase 1, chloroplastic putative polyribonucleotide nucleotidyltransferase 1, chloroplastic probable polyribonucleotide nucleotidyltransferase 1, chloroplastic probable polyribonucleotide nucleotidyltransferase 1, chloroplastic probable polyribonucleotide nucleotidyltransferase 1, chloroplastic probable polyribonucleotide nucleotidyltransferase 1, chloroplastic probable polyribonucleotide nucleotidyltransferase 1, chloroplastic probable polyribonucleotide nucleotidyltransferase 1, chloroplastic probable polyribonucleotide nucleotidyltransferase 1, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 3
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 3
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 3
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 4
ppo03010 Ribosome 3
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 4
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 4
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 3
sot00230 Purine metabolism 2
sot01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
nta01240 Biosynthesis of cofactors 2
nta04146 Peroxisome 2
nta00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
nta01240 Biosynthesis of cofactors 2
nta04146 Peroxisome 2
nta00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03060 Protein export 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03060 Protein export 2
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 4
tae00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
tae00970 Aminoacyl-tRNA biosynthesis 2
tae00270 Cysteine and methionine metabolism 2
tae01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00230 Purine metabolism 2
cre01232 Nucleotide metabolism 2
cre01230 Biosynthesis of amino acids 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100785430 100819741 11438450 7482382 7491063 821181 103859008 103855181 100265692 107913610 107891187 106438964 125587865 102615727 101245783 102599047 107808053 107782252 4342497 103631988 123188625 123044832 123426165 8060701 100824934 5724232
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