ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
gma-u.5	100786646	linoleate 13S-lipoxygenase 2-1, chloroplastic
gma-r.7	100786646	linoleate 13S-lipoxygenase 2-1, chloroplastic
gma-m.5	100786646	linoleate 13S-lipoxygenase 2-1, chloroplastic
gma-u.5	100795276	linoleate 13S-lipoxygenase 2-1, chloroplastic
gma-u.5	100782277	linoleate 13S-lipoxygenase 2-1, chloroplastic
gma-u.5	100787202	linoleate 13S-lipoxygenase 2-1, chloroplastic
mtr-u.5	11443018	linoleate 13S-lipoxygenase 2-1, chloroplastic
mtr-u.5	11442192	linoleate 13S-lipoxygenase 2-1, chloroplastic
mtr-u.5	25492621	linoleate 13S-lipoxygenase 2-1, chloroplastic
ppo-u.5	7496049	linoleate 13S-lipoxygenase 2-1, chloroplastic
ppo-u.5	18094302	linoleate 13S-lipoxygenase 2-1, chloroplastic
ath-u.5	LOX2	lipoxygenase 2
bra-r.6	103852169	lipoxygenase 2, chloroplastic
bra-r.6	103830997	lipoxygenase 2, chloroplastic
bra-r.6	103830994	lipoxygenase 2, chloroplastic
vvi-u.5	100262173	linoleate 13S-lipoxygenase 2-1, chloroplastic
vvi-u.5	100255333	linoleate 13S-lipoxygenase 2-1, chloroplastic
vvi-u.5	100251934	linoleate 13S-lipoxygenase 2-1, chloroplastic
ghi-r.1	107959326	linoleate 13S-lipoxygenase 2-1, chloroplastic
ghi-r.1	107906745	linoleate 13S-lipoxygenase 2-1, chloroplastic
bna-r.1	106380861	lipoxygenase 2, chloroplastic-like
bna-r.1	106353868	lipoxygenase 2, chloroplastic-like
bna-r.1	106361173	lipoxygenase 2, chloroplastic
cit-r.1	102625429	linoleate 13S-lipoxygenase 2-1, chloroplastic
cit-r.1	102625710	linoleate 13S-lipoxygenase 2-1, chloroplastic
cit-r.1	102629656	linoleate 13S-lipoxygenase 2-1, chloroplastic-like
sly-u.5	101262081	linoleate 13S-lipoxygenase 2-1, chloroplastic
sly-u.5	loxC	lipoxygenase
sly-u.5	loxF	lipoxygenase
sot-r.1	102594007	linoleate 13S-lipoxygenase 2-1, chloroplastic-like
sot-r.1	102596122	linoleate 13S-lipoxygenase 2-1, chloroplastic-like
sot-r.1	102596456	linoleate 13S-lipoxygenase 2-1, chloroplastic-like
nta-r.1	107763642	linoleate 13S-lipoxygenase 2-1, chloroplastic-like
nta-r.1	107820590	linoleate 13S-lipoxygenase 2-1, chloroplastic-like
nta-r.1	107778472	linoleate 13S-lipoxygenase 2-1, chloroplastic-like
osa-u.5	4328603	lipoxygenase 2.3, chloroplastic
osa-u.5	4345993	lipoxygenase 7, chloroplastic-like
osa-u.5	4345994	probable lipoxygenase 8, chloroplastic
zma-u.5	103642039	probable lipoxygenase 8, chloroplastic
zma-u.5	lox11	linoleate 13S-lipoxygenase11
zma-u.5	lox10	linoleate 13S-lipoxygenase10
tae-r.2	123132647	lipoxygenase 2.3, chloroplastic
tae-r.2	123101959	lipoxygenase 2.1, chloroplastic
tae-r.2	123110078	lipoxygenase 2.1, chloroplastic
hvu-r.1	123395664	lipoxygenase 2.1, chloroplastic
hvu-r.1	123401613	lipoxygenase 2.3, chloroplastic
sbi-r.1	8055177	probable lipoxygenase 8, chloroplastic
sbi-r.1	110434540	lipoxygenase 2.3, chloroplastic-like
bdi-r.1	100824090	lipoxygenase 2.3, chloroplastic
bdi-r.1	100821730	probable lipoxygenase 8, chloroplastic
bdi-r.1	100832776	lipoxygenase 2.3, chloroplastic

Top 50 coexpressed genes to 100786646 (gma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100786646 (gma-u.5 coexpression data)

CoexMap"100786646"

[Cytoscape]

Annotation

functional annotation

KEGG

gmx00591 [list] [network] Linoleic acid metabolism (46 genes)

gmx00592 [list] [network] alpha-Linolenic acid metabolism (94 genes)

GO BP

GO:0034440 [list] [network] lipid oxidation

(96 genes)

IEA

GO CC

GO MF

GO:0016702 [list] [network] oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	(98 genes)	IEA
GO:0046872 [list] [network] metal ion binding	(3089 genes)	IEA
GO:0005515 [list] [network] protein binding	(7243 genes)	IEA

Protein

XP_003537948.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 8, nucl 1, cyto 1, mito 1, cyto_nucl 1

(predict for XP_003537948.1)

Subcellular
localization
TargetP

mito 7

(predict for XP_003537948.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for 100786646	gma-r.7 for 100786646	gma-m.5 for 100786646	gma-u.5 for 100795276	gma-u.5 for 100782277	gma-u.5 for 100787202	mtr-u.5 for 11443018	mtr-u.5 for 11442192	mtr-u.5 for 25492621	ppo-u.5 for 7496049	ppo-u.5 for 18094302	ath-u.5 for LOX2	bra-r.6 for 103852169	bra-r.6 for 103830997	bra-r.6 for 103830994	vvi-u.5 for 100262173	vvi-u.5 for 100255333	vvi-u.5 for 100251934	ghi-r.1 for 107959326	ghi-r.1 for 107906745	bna-r.1 for 106380861	bna-r.1 for 106353868	bna-r.1 for 106361173	cit-r.1 for 102625429	cit-r.1 for 102625710	cit-r.1 for 102629656	sly-u.5 for 101262081	sly-u.5 for loxC	sly-u.5 for loxF	sot-r.1 for 102594007	sot-r.1 for 102596122	sot-r.1 for 102596456	nta-r.1 for 107763642	nta-r.1 for 107820590	nta-r.1 for 107778472	osa-u.5 for 4328603	osa-u.5 for 4345993	osa-u.5 for 4345994	zma-u.5 for 103642039	zma-u.5 for lox11	zma-u.5 for lox10	tae-r.2 for 123132647	tae-r.2 for 123101959	tae-r.2 for 123110078	hvu-r.1 for 123395664	hvu-r.1 for 123401613	sbi-r.1 for 8055177	sbi-r.1 for 110434540	bdi-r.1 for 100824090	bdi-r.1 for 100821730	bdi-r.1 for 100832776

Ortholog

Ortholog ID: 1058

Species

gma

mtr

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

LOX2

loxC

loxF

lox11

lox10

Function^*

linoleate 13S-lipoxygenase 2-1, chloroplastic

lipoxygenase 2

lipoxygenase 2, chloroplastic

lipoxygenase 2, chloroplastic-like

linoleate 13S-lipoxygenase 2-1, chloroplastic

lipoxygenase 2, chloroplastic-like

linoleate 13S-lipoxygenase 2-1, chloroplastic

linoleate 13S-lipoxygenase 2-1, chloroplastic-like

linoleate 13S-lipoxygenase 2-1, chloroplastic

lipoxygenase

linoleate 13S-lipoxygenase 2-1, chloroplastic-like