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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100792874   E3 ubiquitin-protein ligase RDUF2 
 gma-u.5   100784364   probable E3 ubiquitin-protein ligase RHC2A 
 gma-u.5   121172634   E3 ubiquitin-protein ligase RDUF1 
 mtr-u.5   11419123   E3 ubiquitin-protein ligase RDUF2 
 mtr-u.5   25489325   probable E3 ubiquitin-protein ligase RHC2A 
 ppo-u.5   7485690   E3 ubiquitin-protein ligase RDUF1 
 ppo-u.5   7490384   probable E3 ubiquitin-protein ligase RHC2A 
 ppo-u.5   7454941   E3 ubiquitin-protein ligase RDUF2 
 ath-u.5   RHC2A   RING-H2 finger C2A 
 ath-u.5   RDUF1   zinc finger (C3HC4-type RING finger) family protein 
 ath-u.5   RDUF2   zinc finger (C3HC4-type RING finger) family protein 
 vvi-u.5   100265659   E3 ubiquitin-protein ligase RDUF1 
 vvi-u.5   100256404   probable E3 ubiquitin-protein ligase RHC2A 
 vvi-u.5   100244277   probable E3 ubiquitin-protein ligase RHC2A 
 sly-u.5   101256882   probable E3 ubiquitin-protein ligase RHC2A 
 sly-u.5   101256865   probable E3 ubiquitin-protein ligase RHC2A 
 osa-u.5   4326393   probable E3 ubiquitin-protein ligase RHC2A 
 osa-u.5   4332393   E3 ubiquitin-protein ligase RDUF2 
 osa-u.5   4337586   E3 ubiquitin-protein ligase RDUF2 
 zma-u.5   103637322   probable E3 ubiquitin-protein ligase RHC2A 
 zma-u.5   100216907   putative RING zinc finger domain superfamily protein 
 zma-u.5   107546767   Putative RING zinc finger domain superfamily protein 

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Top 50 coexpressed genes to 100792874 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100792874 (gma-u.5 coexpression data)

CoexMap"100789228"


gmaLOC100789228 | Entrez gene ID : 100789228      
Species gma mtr ppo ath vvi sly osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 3 2 3 3 3 2 3 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0016567 [list] [network] protein ubiquitination  (610 genes)  IEA  
GO CC
GO:0005737 [list] [network] cytoplasm  (9233 genes)  IEA  
GO MF
GO:0061630 [list] [network] ubiquitin protein ligase activity  (292 genes)  IEA  
Protein XP_003545254.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  mito 3,  cyto_nucl 3,  cysk_nucl 3,  nucl_plas 3  (predict for XP_003545254.1)
Subcellular
localization
TargetP
other 4,  mito 3  (predict for XP_003545254.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100792874

.
gma-u.5
for
100784364

.
gma-u.5
for
121172634

.
mtr-u.5
for
11419123

.
mtr-u.5
for
25489325

.
ppo-u.5
for
7485690

.
ppo-u.5
for
7490384

.
ppo-u.5
for
7454941

.
ath-u.5
for
RHC2A

.
ath-u.5
for
RDUF1

.
ath-u.5
for
RDUF2

.
vvi-u.5
for
100265659

.
vvi-u.5
for
100256404

.
vvi-u.5
for
100244277

.
sly-u.5
for
101256882

.
sly-u.5
for
101256865

.
osa-u.5
for
4326393

.
osa-u.5
for
4332393

.
osa-u.5
for
4337586

.
zma-u.5
for
103637322

.
zma-u.5
for
100216907

.
zma-u.5
for
107546767

.


Ortholog ID: 952
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr tae tae hvu hvu ghi ghi bna bna sbi sbi sot sot cit cit bdi bdi nta nta
Symbol RDUF1 RHC2A LOC100804867 LOC100792874 LOC101256865 LOC101256882 LOC4332393 LOC4337586 LOC103639315 LOC103637322 LOC103845376 LOC103851573 LOC100244277 LOC100256404 LOC7490384 LOC7468627 LOC11414430 LOC123080990 LOC123072826 LOC123443564 LOC123441568 LOC107929601 LOC107942404 LOC106347545 LOC125582106 LOC8081514 LOC8067315 LOC102605063 LOC102587426 LOC102625091 LOC102628945 LOC100825919 LOC100821106 LOC107824926 LOC107812906
Function* zinc finger (C3HC4-type RING finger) family protein RING-H2 finger C2A E3 ubiquitin-protein ligase RDUF2 E3 ubiquitin-protein ligase RDUF2 probable E3 ubiquitin-protein ligase RHC2A probable E3 ubiquitin-protein ligase RHC2A E3 ubiquitin-protein ligase RDUF2 E3 ubiquitin-protein ligase RDUF2 putative RING zinc finger domain superfamily protein probable E3 ubiquitin-protein ligase RHC2A E3 ubiquitin-protein ligase RDUF2 E3 ubiquitin-protein ligase RDUF2 probable E3 ubiquitin-protein ligase RHC2A probable E3 ubiquitin-protein ligase RHC2A probable E3 ubiquitin-protein ligase RHC2A E3 ubiquitin-protein ligase RDUF1 E3 ubiquitin-protein ligase RDUF2 probable E3 ubiquitin-protein ligase RHC2A probable E3 ubiquitin-protein ligase RHC2A probable E3 ubiquitin-protein ligase RHC2A E3 ubiquitin-protein ligase RDUF1-like probable E3 ubiquitin-protein ligase RHC2A E3 ubiquitin-protein ligase RDUF1 E3 ubiquitin-protein ligase RDUF1-like E3 ubiquitin-protein ligase RDUF2-like E3 ubiquitin-protein ligase RDUF2 probable E3 ubiquitin-protein ligase RHC2A E3 ubiquitin-protein ligase RING1-like E3 ubiquitin-protein ligase RING1 probable E3 ubiquitin-protein ligase RHC2A E3 ubiquitin-protein ligase RDUF2 E3 ubiquitin-protein ligase RDUF1 E3 ubiquitin-protein ligase RDUF2 putative E3 ubiquitin-protein ligase RHC2A E3 ubiquitin-protein ligase RDUF2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00053 Ascorbate and aldarate metabolism 2
ath00520 Amino sugar and nucleotide sugar metabolism 2
ath01240 Biosynthesis of cofactors 2
ath01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00270 Cysteine and methionine metabolism 2
zma00670 One carbon pool by folate 2
zma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04626 Plant-pathogen interaction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04626 Plant-pathogen interaction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 4
hvu03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 2
bna04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00860 Porphyrin metabolism 2
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 823815 818556 100804867 100792874 101256865 101256882 4332393 4337586 103639315 103637322 103845376 103851573 100244277 100256404 7490384 7468627 11414430 123080990 123072826 123443564 123441568 107929601 107942404 106347545 125582106 8081514 8067315 102605063 102587426 102625091 102628945 100825919 100821106 107824926 107812906
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