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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100796851   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 
 gma-r.7   100796851   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 
 gma-u.5   100796317   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 
 gma-u.5   100809681   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 
 gma-u.5   100809141   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 
 mtr-u.5   25481870   cytoplasmic 60S subunit biogenesis factor REI1 homolog 2 
 ppo-u.5   18100760   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 
 ppo-u.5   7458738   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 
 ath-u.5   FZF   Zinc finger protein 622 
 ath-u.5   AT4G31420   Zinc finger protein 622 
 bra-r.6   103851869   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 
 bra-r.6   103864558   cytoplasmic 60S subunit biogenesis factor REI1 homolog 2 
 bra-r.6   103842248   cytoplasmic 60S subunit biogenesis factor REI1 homolog 2 
 vvi-u.5   100256015   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 
 ghi-r.1   107906770   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 
 ghi-r.1   107930820   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 
 ghi-r.1   107932975   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 
 bna-r.1   106446647   cytoplasmic 60S subunit biogenesis factor REI1 homolog 2-like 
 bna-r.1   106375422   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1-like 
 bna-r.1   106365144   cytoplasmic 60S subunit biogenesis factor REI1 homolog 2-like 
 cit-r.1   102630868   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 
 sly-u.5   101267254   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 
 sly-u.5   101255281   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 
 sot-r.1   102583232   zinc finger protein 622 
 sot-r.1   102580246   zinc finger protein 622 
 nta-r.1   107780169   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1-like 
 nta-r.1   107765640   cytoplasmic 60S subunit biogenesis factor REI1 homolog 2 
 nta-r.1   107785020   cytoplasmic 60S subunit biogenesis factor REI1 homolog 2 
 osa-u.5   107277228   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 
 osa-u.5   4341920   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 
 zma-u.5   100284880   uncharacterized LOC100284880 
 tae-r.2   123165905   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 
 tae-r.2   123159188   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 
 tae-r.2   123148792   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 
 hvu-r.1   123407376   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1-like 
 sbi-r.1   8063801   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 
 bdi-r.1   100828769   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 
 cre-r.1   CHLRE_17g716400v5   uncharacterized protein 

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Top 50 coexpressed genes to 100796851 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100796851 (gma-u.5 coexpression data)

CoexMap"100796851"


gmaLOC100796851 | Entrez gene ID : 100796851      
Species gma mtr ppo ath bra vvi ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 5 1 2 2 3 1 3 3 1 2 2 3 2 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0042273 [list] [network] ribosomal large subunit biogenesis  (156 genes)  IEA  
GO CC
GO:0030687 [list] [network] preribosome, large subunit precursor  (41 genes)  IEA  
GO MF
GO:0008270 [list] [network] zinc ion binding  (1182 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (6221 genes)  IEA  
Protein XP_003550141.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  nucl 4,  mito 1  (predict for XP_003550141.1)
Subcellular
localization
TargetP
other 9  (predict for XP_003550141.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100796851
gma-r.7
for
100796851
gma-u.5
for
100796317
gma-u.5
for
100809681
gma-u.5
for
100809141
mtr-u.5
for
25481870
ppo-u.5
for
18100760
ppo-u.5
for
7458738
ath-u.5
for
FZF
ath-u.5
for
AT4G31420
bra-r.6
for
103851869
bra-r.6
for
103864558
bra-r.6
for
103842248
vvi-u.5
for
100256015
ghi-r.1
for
107906770
ghi-r.1
for
107930820
ghi-r.1
for
107932975
bna-r.1
for
106446647
bna-r.1
for
106375422
bna-r.1
for
106365144
cit-r.1
for
102630868
sly-u.5
for
101267254
sly-u.5
for
101255281
sot-r.1
for
102583232
sot-r.1
for
102580246
nta-r.1
for
107780169
nta-r.1
for
107765640
nta-r.1
for
107785020
osa-u.5
for
107277228
osa-u.5
for
4341920
zma-u.5
for
100284880
tae-r.2
for
123165905
tae-r.2
for
123159188
tae-r.2
for
123148792
hvu-r.1
for
123407376
sbi-r.1
for
8063801
bdi-r.1
for
100828769
cre-r.1
for
CHLRE_17g716400v5


Ortholog ID: 4686
Species gma gma gma mtr ppo ppo ath ath bra bra bra vvi ghi ghi ghi bna bna bna cit sly sly sot sot nta nta nta osa osa zma tae tae tae hvu sbi bdi cre
Symbol LOC100796851 LOC100796317 LOC100809141 LOC25481870 LOC18100760 LOC7458738 FZF AT4G31420 LOC103851869 LOC103864558 LOC103842248 LOC100256015 LOC107930820 LOC107932975 LOC107937921 LOC106446647 LOC106365144 LOC111212119 LOC102630868 LOC101267254 LOC101255281 LOC102583232 LOC102580246 LOC107780169 LOC107765640 LOC107785020 LOC107277228 LOC4341920 LOC100284880 LOC123165905 LOC123159188 LOC123148792 LOC123407376 LOC8063801 LOC100828769 CHLRE_17g716400v5
Function* cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 cytoplasmic 60S subunit biogenesis factor REI1 homolog 2 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 Zinc finger protein 622 Zinc finger protein 622 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 cytoplasmic 60S subunit biogenesis factor REI1 homolog 2 cytoplasmic 60S subunit biogenesis factor REI1 homolog 2 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 cytoplasmic 60S subunit biogenesis factor REI1 homolog 2-like cytoplasmic 60S subunit biogenesis factor REI1 homolog 2-like cytoplasmic 60S subunit biogenesis factor REI1 homolog 1-like cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 zinc finger protein 622 zinc finger protein 622 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1-like cytoplasmic 60S subunit biogenesis factor REI1 homolog 2 cytoplasmic 60S subunit biogenesis factor REI1 homolog 2 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 uncharacterized LOC100284880 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1-like cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00480 Glutathione metabolism 3
ppo00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 3
ath03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
ath04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 6
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 8
bna03013 Nucleocytoplasmic transport 4
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00480 Glutathione metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 5
sly03010 Ribosome 3
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 6
sot03013 Nucleocytoplasmic transport 4
sot03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00230 Purine metabolism 4
nta00240 Pyrimidine metabolism 4
nta00760 Nicotinate and nicotinamide metabolism 4
nta01232 Nucleotide metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta03013 Nucleocytoplasmic transport 2
nta00750 Vitamin B6 metabolism 2
nta01240 Biosynthesis of cofactors 2
nta04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00230 Purine metabolism 3
nta00240 Pyrimidine metabolism 3
nta00760 Nicotinate and nicotinamide metabolism 3
nta01232 Nucleotide metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 5
zma03008 Ribosome biogenesis in eukaryotes 4
zma03013 Nucleocytoplasmic transport 3
zma00770 Pantothenate and CoA biosynthesis 2
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 7
tae03010 Ribosome 3
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 6
tae03010 Ribosome 3
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 5
tae03010 Ribosome 3
tae03013 Nucleocytoplasmic transport 2
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100796851 100796317 100809141 25481870 18100760 7458738 816986 829269 103851869 103864558 103842248 100256015 107930820 107932975 107937921 106446647 106365144 111212119 102630868 101267254 101255281 102583232 102580246 107780169 107765640 107785020 107277228 4341920 100284880 123165905 123159188 123148792 123407376 8063801 100828769 5725983
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