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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8063801   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 
 zma-u.5   100284880   uncharacterized LOC100284880 
 osa-u.5   107277228   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 
 osa-u.5   4341920   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 
 tae-r.2   123165905   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 
 tae-r.2   123159188   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 
 tae-r.2   123148792   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 
 hvu-r.1   123407376   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1-like 
 bdi-r.1   100828769   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 
 ath-u.5   FZF   Zinc finger protein 622 
 ath-u.5   AT4G31420   Zinc finger protein 622 
 gma-u.5   100809141   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 
 gma-u.5   100796851   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 
 gma-u.5   100796317   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 
 sly-u.5   101255281   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 
 sly-u.5   101267254   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 
 bra-r.6   103842248   cytoplasmic 60S subunit biogenesis factor REI1 homolog 2 
 bra-r.6   103851869   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 
 bra-r.6   103864558   cytoplasmic 60S subunit biogenesis factor REI1 homolog 2 
 vvi-u.5   100256015   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 
 ppo-u.5   7458738   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 
 ppo-u.5   18100760   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 
 mtr-u.5   25481870   cytoplasmic 60S subunit biogenesis factor REI1 homolog 2 
 ghi-r.1   107937921   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 
 ghi-r.1   107932975   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 
 ghi-r.1   107930820   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 
 bna-r.1   111212119   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1-like 
 bna-r.1   106365144   cytoplasmic 60S subunit biogenesis factor REI1 homolog 2-like 
 bna-r.1   106375422   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1-like 
 sot-r.1   102583232   zinc finger protein 622 
 sot-r.1   102580246   zinc finger protein 622 
 cit-r.1   102630868   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 
 nta-r.1   107785020   cytoplasmic 60S subunit biogenesis factor REI1 homolog 2 
 nta-r.1   107780169   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1-like 
 nta-r.1   107765640   cytoplasmic 60S subunit biogenesis factor REI1 homolog 2 
 cre-r.1   CHLRE_17g716400v5   uncharacterized protein 

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Top 50 coexpressed genes to 8063801 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8063801 (sbi-r.1 coexpression data)

CoexMap"8063801"


sbiLOC8063801 | Entrez gene ID : 8063801      
Species sbi zma osa tae hvu bdi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 1 1 2 3 1 1 2 3 2 3 1 2 1 3 3 2 1 3 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0042273 [list] [network] ribosomal large subunit biogenesis  (75 genes)  IEA  
GO CC
GO:0030687 [list] [network] preribosome, large subunit precursor  (25 genes)  IEA  
GO MF
GO:0008270 [list] [network] zinc ion binding  (824 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (3505 genes)  IEA  
Protein XP_002437507.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 1,  chlo 1,  vacu 1,  cysk 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_002437507.1)
Subcellular
localization
TargetP
other 9  (predict for XP_002437507.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8063801
zma-u.5
for
100284880
osa-u.5
for
107277228
osa-u.5
for
4341920
tae-r.2
for
123165905
tae-r.2
for
123159188
tae-r.2
for
123148792
hvu-r.1
for
123407376
bdi-r.1
for
100828769
ath-u.5
for
FZF
ath-u.5
for
AT4G31420
gma-u.5
for
100809141
gma-u.5
for
100796851
gma-u.5
for
100796317
sly-u.5
for
101255281
sly-u.5
for
101267254
bra-r.6
for
103842248
bra-r.6
for
103851869
bra-r.6
for
103864558
vvi-u.5
for
100256015
ppo-u.5
for
7458738
ppo-u.5
for
18100760
mtr-u.5
for
25481870
ghi-r.1
for
107937921
ghi-r.1
for
107932975
ghi-r.1
for
107930820
bna-r.1
for
111212119
bna-r.1
for
106365144
bna-r.1
for
106375422
sot-r.1
for
102583232
sot-r.1
for
102580246
cit-r.1
for
102630868
nta-r.1
for
107785020
nta-r.1
for
107780169
nta-r.1
for
107765640
cre-r.1
for
CHLRE_17g716400v5


Ortholog ID: 4686
Species sbi zma osa osa tae tae tae hvu bdi ath ath gma gma gma sly sly bra bra bra vvi ppo ppo mtr ghi ghi ghi bna bna bna sot sot cit nta nta nta cre
Symbol LOC8063801 LOC100284880 LOC107277228 LOC4341920 LOC123165905 LOC123159188 LOC123148792 LOC123407376 LOC100828769 FZF AT4G31420 LOC100809141 LOC100796851 LOC100796317 LOC101255281 LOC101267254 LOC103842248 LOC103851869 LOC103864558 LOC100256015 LOC7458738 LOC18100760 LOC25481870 LOC107937921 LOC107932975 LOC107930820 LOC111212119 LOC106365144 LOC106446647 LOC102583232 LOC102580246 LOC102630868 LOC107785020 LOC107780169 LOC107765640 CHLRE_17g716400v5
Function* cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 uncharacterized LOC100284880 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1-like cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 Zinc finger protein 622 Zinc finger protein 622 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 cytoplasmic 60S subunit biogenesis factor REI1 homolog 2 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 cytoplasmic 60S subunit biogenesis factor REI1 homolog 2 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 cytoplasmic 60S subunit biogenesis factor REI1 homolog 2 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1-like cytoplasmic 60S subunit biogenesis factor REI1 homolog 2-like cytoplasmic 60S subunit biogenesis factor REI1 homolog 2-like zinc finger protein 622 zinc finger protein 622 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 cytoplasmic 60S subunit biogenesis factor REI1 homolog 2 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1-like cytoplasmic 60S subunit biogenesis factor REI1 homolog 2 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 5
zma03008 Ribosome biogenesis in eukaryotes 4
zma03013 Nucleocytoplasmic transport 3
zma00770 Pantothenate and CoA biosynthesis 2
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 7
tae03010 Ribosome 3
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 6
tae03010 Ribosome 3
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 5
tae03010 Ribosome 3
tae03013 Nucleocytoplasmic transport 2
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 3
ath03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
ath04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 5
sly03010 Ribosome 3
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00480 Glutathione metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00480 Glutathione metabolism 3
ppo00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 8
bna03013 Nucleocytoplasmic transport 4
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 6
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 6
sot03013 Nucleocytoplasmic transport 4
sot03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00230 Purine metabolism 3
nta00240 Pyrimidine metabolism 3
nta00760 Nicotinate and nicotinamide metabolism 3
nta01232 Nucleotide metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00230 Purine metabolism 4
nta00240 Pyrimidine metabolism 4
nta00760 Nicotinate and nicotinamide metabolism 4
nta01232 Nucleotide metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta03013 Nucleocytoplasmic transport 2
nta00750 Vitamin B6 metabolism 2
nta01240 Biosynthesis of cofactors 2
nta04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 8063801 100284880 107277228 4341920 123165905 123159188 123148792 123407376 100828769 816986 829269 100809141 100796851 100796317 101255281 101267254 103842248 103851869 103864558 100256015 7458738 18100760 25481870 107937921 107932975 107930820 111212119 106365144 106446647 102583232 102580246 102630868 107785020 107780169 107765640 5725983
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