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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   18100760   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 
 ppo-r.4   18100760   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 
 ppo-u.5   7458738   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 
 gma-u.5   100809141   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 
 gma-u.5   100796851   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 
 gma-u.5   100796317   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 
 mtr-u.5   25481870   cytoplasmic 60S subunit biogenesis factor REI1 homolog 2 
 ath-u.5   FZF   Zinc finger protein 622 
 ath-u.5   AT4G31420   Zinc finger protein 622 
 vvi-u.5   100256015   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 
 sly-u.5   101255281   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 
 sly-u.5   101267254   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 
 osa-u.5   107277228   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 
 osa-u.5   4341920   cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 
 zma-u.5   100284880   uncharacterized LOC100284880 

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Top 50 coexpressed genes to 18100760 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 18100760 (ppo-u.5 coexpression data)

CoexMap"18100760"


ppoLOC18100760 | Entrez gene ID : 18100760    
Species ppo gma mtr ath vvi sly osa zma hvu sot tae nta bra cit ghi bna bdi sbi cre
Paralog 3 3 1 2 1 2 2 1 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0042273 [list] [network] ribosomal large subunit biogenesis  (96 genes)  IEA  
GO CC
GO:0030687 [list] [network] preribosome, large subunit precursor  (36 genes)  IEA  
GO MF
GO:0008270 [list] [network] zinc ion binding  (777 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (4002 genes)  IEA  
Protein XP_006382168.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  chlo 4  (predict for XP_006382168.1)
Subcellular
localization
TargetP
other 9  (predict for XP_006382168.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
18100760

.
ppo-r.4
for
18100760

.
ppo-u.5
for
7458738

.
gma-u.5
for
100809141

.
gma-u.5
for
100796851

.
gma-u.5
for
100796317

.
mtr-u.5
for
25481870

.
ath-u.5
for
FZF

.
ath-u.5
for
AT4G31420

.
vvi-u.5
for
100256015

.
sly-u.5
for
101255281

.
sly-u.5
for
101267254

.
osa-u.5
for
107277228

.
osa-u.5
for
4341920

.
zma-u.5
for
100284880

.


Ortholog ID: 4686
Species ath ath gma gma sly sly osa osa zma bra bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot sot cit bdi nta nta
Symbol AT4G31420 FZF LOC100796317 LOC100796851 LOC101267254 LOC101255281 LOC4341920 LOC107277228 LOC100284880 LOC103851869 LOC103842248 LOC100256015 LOC18100760 LOC7458738 LOC25481870 LOC123159188 LOC123165905 LOC123407376 LOC107932975 LOC107937921 LOC106446647 LOC111212119 CHLRE_17g716400v5 LOC8063801 LOC102580246 LOC102583232 LOC102630868 LOC100828769 LOC107785020 LOC107780169
Function* Zinc finger protein 622 Zinc finger protein 622 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 uncharacterized LOC100284880 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 cytoplasmic 60S subunit biogenesis factor REI1 homolog 2 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 cytoplasmic 60S subunit biogenesis factor REI1 homolog 2 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1-like cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 cytoplasmic 60S subunit biogenesis factor REI1 homolog 2-like cytoplasmic 60S subunit biogenesis factor REI1 homolog 1-like uncharacterized protein cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 zinc finger protein 622 zinc finger protein 622 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 cytoplasmic 60S subunit biogenesis factor REI1 homolog 2 cytoplasmic 60S subunit biogenesis factor REI1 homolog 1-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
ath04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 3
ath03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00480 Glutathione metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 5
sly03010 Ribosome 3
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 5
zma03008 Ribosome biogenesis in eukaryotes 4
zma03013 Nucleocytoplasmic transport 3
zma00770 Pantothenate and CoA biosynthesis 2
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00480 Glutathione metabolism 3
ppo00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 6
tae03010 Ribosome 3
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 7
tae03010 Ribosome 3
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 6
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 6
sot03013 Nucleocytoplasmic transport 4
sot03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00230 Purine metabolism 3
nta00240 Pyrimidine metabolism 3
nta00760 Nicotinate and nicotinamide metabolism 3
nta01232 Nucleotide metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00230 Purine metabolism 4
nta00240 Pyrimidine metabolism 4
nta00760 Nicotinate and nicotinamide metabolism 4
nta01232 Nucleotide metabolism 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 829269 816986 100796317 100796851 101267254 101255281 4341920 107277228 100284880 103851869 103842248 100256015 18100760 7458738 25481870 123159188 123165905 123407376 107932975 107937921 106446647 111212119 5725983 8063801 102580246 102583232 102630868 100828769 107785020 107780169
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