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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100800927   U4/U6 small nuclear ribonucleoprotein PRP4-like protein 
 gma-r.7   100800927   U4/U6 small nuclear ribonucleoprotein PRP4-like protein 
 gma-m.5   100800927   U4/U6 small nuclear ribonucleoprotein PRP4-like protein 
 gma-u.5   100788948   U4/U6 small nuclear ribonucleoprotein PRP4-like protein 
 mtr-u.5   11434456   U4/U6 small nuclear ribonucleoprotein PRP4-like protein 
 mtr-u.5   25488880   U4/U6 small nuclear ribonucleoprotein PRP4-like protein 
 mtr-u.5   25479578   U4/U6 small nuclear ribonucleoprotein PRP4-like protein 
 ppo-u.5   7496110   U4/U6 small nuclear ribonucleoprotein PRP4-like protein 
 ath-u.5   LIS   WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-like protein 
 bra-r.6   103866560   U4/U6 small nuclear ribonucleoprotein PRP4-like protein 
 bra-r.6   103865889   U4/U6 small nuclear ribonucleoprotein PRP4-like protein 
 vvi-u.5   100243602   U4/U6 small nuclear ribonucleoprotein PRP4-like protein 
 ghi-r.1   107929465   U4/U6 small nuclear ribonucleoprotein PRP4-like protein 
 ghi-r.1   107929129   U4/U6 small nuclear ribonucleoprotein PRP4-like protein 
 bna-r.1   106391668   U4/U6 small nuclear ribonucleoprotein PRP4-like protein 
 bna-r.1   106450664   U4/U6 small nuclear ribonucleoprotein PRP4-like protein 
 bna-r.1   106447552   U4/U6 small nuclear ribonucleoprotein PRP4-like protein 
 cit-r.1   102616360   U4/U6 small nuclear ribonucleoprotein PRP4-like protein 
 sly-u.5   101256472   U4/U6 small nuclear ribonucleoprotein PRP4-like protein 
 sot-r.1   102598086   U4/U6 small nuclear ribonucleoprotein PRP4-like protein 
 nta-r.1   107800703   U4/U6 small nuclear ribonucleoprotein PRP4-like protein 
 nta-r.1   107801611   U4/U6 small nuclear ribonucleoprotein PRP4-like protein 
 osa-u.5   4332861   U4/U6 small nuclear ribonucleoprotein PRP4-like protein 
 osa-u.5   107275966   U4/U6 small nuclear ribonucleoprotein PRP4-like protein 
 zma-u.5   100279862   uncharacterized LOC100279862 
 tae-r.2   123097378   U4/U6 small nuclear ribonucleoprotein PRP4-like protein 
 tae-r.2   123085934   U4/U6 small nuclear ribonucleoprotein PRP4-like protein 
 tae-r.2   123052147   U4/U6 small nuclear ribonucleoprotein PRP4-like protein 
 hvu-r.1   123425403   U4/U6 small nuclear ribonucleoprotein PRP4-like protein 
 hvu-r.1   123448446   U4/U6 small nuclear ribonucleoprotein PRP4-like protein 
 sbi-r.1   8082648   U4/U6 small nuclear ribonucleoprotein PRP4-like protein 
 bdi-r.1   100846442   U4/U6 small nuclear ribonucleoprotein PRP4-like protein 
 cre-r.1   CHLRE_16g662800v5   uncharacterized protein 

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Top 50 coexpressed genes to 100800927 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100800927 (gma-u.5 coexpression data)

CoexMap"100800927"


gmaLOC100800927 | Entrez gene ID : 100800927      
Species gma mtr ppo ath bra vvi ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 3 1 1 2 1 2 3 1 1 1 2 2 1 3 2 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx03040 [list] [network] Spliceosome (466 genes)
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (282 genes)  IEA  
GO CC
GO:0046540 [list] [network] U4/U6 x U5 tri-snRNP complex  (45 genes)  IEA  
GO MF
GO:0030621 [list] [network] U4 snRNA binding  (2 genes)  IEA  
GO:0017070 [list] [network] U6 snRNA binding  (12 genes)  IEA  
GO:0005515 [list] [network] protein binding  (7243 genes)  IEA  
Protein XP_003519096.1 [sequence] [blastp]
XP_006575267.1 [sequence] [blastp]
XP_006575268.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  cyto 3,  nucl_plas 3  (predict for XP_003519096.1)
nucl 5,  cyto 3,  nucl_plas 3  (predict for XP_006575267.1)
nucl 5,  cyto 3,  nucl_plas 3  (predict for XP_006575268.1)
Subcellular
localization
TargetP
other 7,  chlo 3  (predict for XP_003519096.1)
other 7,  chlo 3  (predict for XP_006575267.1)
other 7,  chlo 3  (predict for XP_006575268.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100800927
gma-r.7
for
100800927
gma-m.5
for
100800927
gma-u.5
for
100788948
mtr-u.5
for
11434456
mtr-u.5
for
25488880
mtr-u.5
for
25479578
ppo-u.5
for
7496110
ath-u.5
for
LIS
bra-r.6
for
103866560
bra-r.6
for
103865889
vvi-u.5
for
100243602
ghi-r.1
for
107929465
ghi-r.1
for
107929129
bna-r.1
for
106391668
bna-r.1
for
106450664
bna-r.1
for
106447552
cit-r.1
for
102616360
sly-u.5
for
101256472
sot-r.1
for
102598086
nta-r.1
for
107800703
nta-r.1
for
107801611
osa-u.5
for
4332861
osa-u.5
for
107275966
zma-u.5
for
100279862
tae-r.2
for
123097378
tae-r.2
for
123085934
tae-r.2
for
123052147
hvu-r.1
for
123425403
hvu-r.1
for
123448446
sbi-r.1
for
8082648
bdi-r.1
for
100846442
cre-r.1
for
CHLRE_16g662800v5


Ortholog ID: 5051
Species gma gma mtr mtr mtr ppo ath bra bra vvi ghi ghi bna bna bna cit sly sot nta nta osa osa zma tae tae tae hvu hvu bdi cre
Symbol LOC100800927 LOC100788948 LOC11434456 LOC25488880 LOC25479578 LOC7496110 LIS LOC103866560 LOC103865889 LOC100243602 LOC107929465 LOC107929129 LOC106391668 LOC106450664 LOC106447552 LOC102616360 LOC101256472 LOC102598086 LOC107800703 LOC107801611 LOC4332861 LOC107275966 LOC100279862 LOC123097378 LOC123085934 LOC123052147 LOC123425403 LOC123448446 LOC100846442 CHLRE_16g662800v5
Function* U4/U6 small nuclear ribonucleoprotein PRP4-like protein U4/U6 small nuclear ribonucleoprotein PRP4-like protein U4/U6 small nuclear ribonucleoprotein PRP4-like protein U4/U6 small nuclear ribonucleoprotein PRP4-like protein U4/U6 small nuclear ribonucleoprotein PRP4-like protein U4/U6 small nuclear ribonucleoprotein PRP4-like protein WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-like protein U4/U6 small nuclear ribonucleoprotein PRP4-like protein U4/U6 small nuclear ribonucleoprotein PRP4-like protein U4/U6 small nuclear ribonucleoprotein PRP4-like protein U4/U6 small nuclear ribonucleoprotein PRP4-like protein U4/U6 small nuclear ribonucleoprotein PRP4-like protein U4/U6 small nuclear ribonucleoprotein PRP4-like protein U4/U6 small nuclear ribonucleoprotein PRP4-like protein U4/U6 small nuclear ribonucleoprotein PRP4-like protein U4/U6 small nuclear ribonucleoprotein PRP4-like protein U4/U6 small nuclear ribonucleoprotein PRP4-like protein U4/U6 small nuclear ribonucleoprotein PRP4-like protein U4/U6 small nuclear ribonucleoprotein PRP4-like protein U4/U6 small nuclear ribonucleoprotein PRP4-like protein U4/U6 small nuclear ribonucleoprotein PRP4-like protein U4/U6 small nuclear ribonucleoprotein PRP4-like protein uncharacterized LOC100279862 U4/U6 small nuclear ribonucleoprotein PRP4-like protein U4/U6 small nuclear ribonucleoprotein PRP4-like protein U4/U6 small nuclear ribonucleoprotein PRP4-like protein U4/U6 small nuclear ribonucleoprotein PRP4-like protein U4/U6 small nuclear ribonucleoprotein PRP4-like protein U4/U6 small nuclear ribonucleoprotein PRP4-like protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00280 Valine, leucine and isoleucine degradation 2
gma00410 beta-Alanine metabolism 2
gma00640 Propanoate metabolism 2
gma01200 Carbon metabolism 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 5
gma03040 Spliceosome 5
gma03013 Nucleocytoplasmic transport 2
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 5
ppo03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
ath03013 Nucleocytoplasmic transport 2
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 5
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
cit00970 Aminoacyl-tRNA biosynthesis 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 5
sly03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 4
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 6
nta03040 Spliceosome 3
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 6
nta03040 Spliceosome 6
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 6
tae03013 Nucleocytoplasmic transport 5
tae03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 7
tae03013 Nucleocytoplasmic transport 6
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 5
tae03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 2
hvu03008 Ribosome biogenesis in eukaryotes 2
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
hvu03013 Nucleocytoplasmic transport 2
hvu03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
bdi03050 Proteasome 4
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100800927 100788948 11434456 25488880 25479578 7496110 818748 103866560 103865889 100243602 107929465 107929129 106391668 106450664 106447552 102616360 101256472 102598086 107800703 107801611 4332861 107275966 100279862 123097378 123085934 123052147 123425403 123448446 100846442 5723441
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