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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   LIS   WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-like protein 
 ath-r.7   LIS   WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-like protein 
 ath-m.9   LIS   WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-like protein 
 ath-e.2   LIS   WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-like protein 
 ath-m.4.bio   LIS   WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-like protein 
 ath-m.4.hor   LIS   WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-like protein 
 ath-m.4.lig   LIS   WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-like protein 
 ath-m.4.str   LIS   WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-like protein 
 ath-m.4.tis   LIS   WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-like protein 
 gma-u.5   100800927   U4/U6 small nuclear ribonucleoprotein PRP4-like protein 
 gma-u.5   100788948   U4/U6 small nuclear ribonucleoprotein PRP4-like protein 
 vvi-u.5   100243602   U4/U6 small nuclear ribonucleoprotein PRP4-like protein 
 ppo-u.5   7496110   U4/U6 small nuclear ribonucleoprotein PRP4-like protein 
 mtr-u.5   25479578   U4/U6 small nuclear ribonucleoprotein PRP4-like protein 
 mtr-u.5   11434456   U4/U6 small nuclear ribonucleoprotein PRP4-like protein 
 mtr-u.5   25488880   U4/U6 small nuclear ribonucleoprotein PRP4-like protein 
 sly-u.5   101256472   U4/U6 small nuclear ribonucleoprotein PRP4-like protein 
 osa-u.5   4332861   U4/U6 small nuclear ribonucleoprotein PRP4-like protein 
 osa-u.5   107275966   U4/U6 small nuclear ribonucleoprotein PRP4-like protein 
 zma-u.5   100279862   uncharacterized LOC100279862 

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Top 50 coexpressed genes to LIS (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to LIS (ath-u.5 coexpression data)

CoexMap"818748"


athLIS | Entrez gene ID : 818748      
Species ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 9 2 1 1 3 1 2 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03040 [list] [network] Spliceosome (243 genes)
GO BP
GO:0009560 [list] [network] embryo sac egg cell differentiation  (4 genes)  IMP  
GO:0001709 [list] [network] cell fate determination  (7 genes)  IMP  
GO:0007267 [list] [network] cell-cell signaling  (81 genes)  IMP  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (112 genes)  ISS  
GO:0009553 [list] [network] embryo sac development  (161 genes)  IMP  
GO CC
GO:0005681 [list] [network] spliceosomal complex  (19 genes)  ISS  
GO:0016607 [list] [network] nuclear speck  (52 genes)  IDA  
GO:0080008 [list] [network] Cul4-RING E3 ubiquitin ligase complex  (121 genes)  ISS  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_001324961.1 [sequence] [blastp]
NP_181681.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  chlo 1,  cyto 1,  plas 1,  cyto_plas 1  (predict for NP_001324961.1)
nucl 4,  chlo 1,  cyto 1,  plas 1,  cyto_plas 1  (predict for NP_181681.1)
Subcellular
localization
TargetP
chlo 5,  other 4  (predict for NP_001324961.1)
chlo 5,  other 4  (predict for NP_181681.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
LIS

.
ath-r.7
for
LIS

.
ath-m.9
for
LIS

.
ath-e.2
for
LIS

.
ath-m.4.bio
for
LIS

.
ath-m.4.hor
for
LIS

.
ath-m.4.lig
for
LIS

.
ath-m.4.str
for
LIS

.
ath-m.4.tis
for
LIS

.
gma-u.5
for
100800927

.
gma-u.5
for
100788948

.
vvi-u.5
for
100243602

.
ppo-u.5
for
7496110

.
mtr-u.5
for
25479578

.
mtr-u.5
for
11434456

.
mtr-u.5
for
25488880

.
sly-u.5
for
101256472

.
osa-u.5
for
4332861

.
osa-u.5
for
107275966

.
zma-u.5
for
100279862

.


Ortholog ID: 5051
Species ath gma gma sly osa osa zma bra bra vvi ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sot cit bdi nta nta
Symbol LIS LOC100800927 LOC100788948 LOC101256472 LOC4332861 LOC107275966 LOC100279862 LOC103865889 LOC103866560 LOC100243602 LOC7496110 LOC25479578 LOC11434456 LOC123097378 LOC123085934 LOC123425403 LOC123448446 LOC107929129 LOC107929465 LOC106391668 LOC106447552 CHLRE_16g662800v5 LOC102598086 LOC102616360 LOC100846442 LOC107801611 LOC107800703
Function* WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-like protein U4/U6 small nuclear ribonucleoprotein PRP4-like protein U4/U6 small nuclear ribonucleoprotein PRP4-like protein U4/U6 small nuclear ribonucleoprotein PRP4-like protein U4/U6 small nuclear ribonucleoprotein PRP4-like protein U4/U6 small nuclear ribonucleoprotein PRP4-like protein uncharacterized LOC100279862 U4/U6 small nuclear ribonucleoprotein PRP4-like protein U4/U6 small nuclear ribonucleoprotein PRP4-like protein U4/U6 small nuclear ribonucleoprotein PRP4-like protein U4/U6 small nuclear ribonucleoprotein PRP4-like protein U4/U6 small nuclear ribonucleoprotein PRP4-like protein U4/U6 small nuclear ribonucleoprotein PRP4-like protein U4/U6 small nuclear ribonucleoprotein PRP4-like protein U4/U6 small nuclear ribonucleoprotein PRP4-like protein U4/U6 small nuclear ribonucleoprotein PRP4-like protein U4/U6 small nuclear ribonucleoprotein PRP4-like protein U4/U6 small nuclear ribonucleoprotein PRP4-like protein U4/U6 small nuclear ribonucleoprotein PRP4-like protein U4/U6 small nuclear ribonucleoprotein PRP4-like protein U4/U6 small nuclear ribonucleoprotein PRP4-like protein uncharacterized protein U4/U6 small nuclear ribonucleoprotein PRP4-like protein U4/U6 small nuclear ribonucleoprotein PRP4-like protein U4/U6 small nuclear ribonucleoprotein PRP4-like protein U4/U6 small nuclear ribonucleoprotein PRP4-like protein U4/U6 small nuclear ribonucleoprotein PRP4-like protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
ath03013 Nucleocytoplasmic transport 2
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00280 Valine, leucine and isoleucine degradation 2
gma00410 beta-Alanine metabolism 2
gma00640 Propanoate metabolism 2
gma01200 Carbon metabolism 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 5
gma03040 Spliceosome 5
gma03013 Nucleocytoplasmic transport 2
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 5
sly03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 5
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 5
ppo03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 6
tae03013 Nucleocytoplasmic transport 5
tae03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 7
tae03013 Nucleocytoplasmic transport 6
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 2
hvu03008 Ribosome biogenesis in eukaryotes 2
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
hvu03013 Nucleocytoplasmic transport 2
hvu03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 4
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
cit00970 Aminoacyl-tRNA biosynthesis 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
bdi03050 Proteasome 4
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 6
nta03040 Spliceosome 6
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 6
nta03040 Spliceosome 3
nta03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 818748 100800927 100788948 101256472 4332861 107275966 100279862 103865889 103866560 100243602 7496110 25479578 11434456 123097378 123085934 123425403 123448446 107929129 107929465 106391668 106447552 5723441 102598086 102616360 100846442 107801611 107800703
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