ATTED-II : GeneCoexpression result

Species	Gene	Description
gma-u.5	100811387	nucleolin
gma-r.7	100811387	nucleolin
gma-u.5	100777658	nucleolin
gma-u.5	100779340	nucleolin
gma-u.5	100808583	nucleolin
mtr-u.5	25500115	RNA-binding motif protein, Y chromosome, family 1 member B
mtr-u.5	11433736	nucleolin
ppo-u.5	7483804	uncharacterized LOC7483804
ppo-u.5	18105096	uncharacterized LOC18105096
ath-u.5	AT2G44710	RNA-binding (RRM/RBD/RNP motifs) family protein
bra-r.6	103866825	RNA binding motif protein, X-linked-like-1
vvi-u.5	100266805	uncharacterized LOC100266805
vvi-u.5	100232913	heterogeneous nuclear ribonucleoprotein Q
ghi-r.1	107911856	nucleolin
ghi-r.1	107923379	nucleolin
ghi-r.1	107911855	nucleolin
bna-r.1	106395828	nucleolin-like
bna-r.1	106450774	RNA-binding motif protein, X chromosome
cit-r.1	RRMP1	RNA recognition motif protein 1
sly-u.5	101251325	uncharacterized LOC101251325
sly-u.5	101258799	heterogeneous nuclear ribonucleoprotein Q
sly-u.5	101259595	heterogeneous nuclear ribonucleoprotein Q-like
sot-r.1	102580113	nucleolin-like
sot-r.1	102593822	heterogeneous nuclear ribonucleoprotein R-like
sot-r.1	102581134	nucleolin-like
nta-r.1	107831253	uncharacterized LOC107831253
nta-r.1	107804749	uncharacterized LOC107804749
nta-r.1	107802337	uncharacterized LOC107802337
osa-u.5	4336550	uncharacterized LOC4336550
zma-u.5	109943278	heterogeneous nuclear ribonucleoprotein Q
zma-u.5	541976	RNA recognition water-stress protein 1
zma-u.5	100216781	uncharacterized LOC100216781
tae-r.2	123189952	nucleolin
tae-r.2	123054073	nucleolin
tae-r.2	123046192	nucleolin
hvu-r.1	123427396	nucleolin
sbi-r.1	110436555	nucleolin
bdi-r.1	100827844	uncharacterized LOC100827844

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005634 [list] [network] nucleus

(5531 genes)

IEA

GO MF

GO:0003729 [list] [network] mRNA binding

(563 genes)

IEA

Protein

XP_003534480.1 [sequence] [blastp]
XP_006587782.1 [sequence] [blastp]
XP_040861086.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 7, mito 2	(predict for XP_003534480.1)
nucl 7, mito 2	(predict for XP_006587782.1)
nucl 4, mito 4, chlo 2, cyto_nucl 2, cysk_nucl 2, nucl_plas 2	(predict for XP_040861086.1)

Subcellular
localization
TargetP

chlo 4, mito 3	(predict for XP_003534480.1)
chlo 4, mito 3	(predict for XP_006587782.1)
chlo 4, mito 3	(predict for XP_040861086.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for 100811387	gma-r.7 for 100811387	gma-u.5 for 100777658	gma-u.5 for 100779340	gma-u.5 for 100808583	mtr-u.5 for 25500115	mtr-u.5 for 11433736	ppo-u.5 for 7483804	ppo-u.5 for 18105096	ath-u.5 for AT2G44710	bra-r.6 for 103866825	vvi-u.5 for 100266805	vvi-u.5 for 100232913	ghi-r.1 for 107911856	ghi-r.1 for 107923379	ghi-r.1 for 107911855	bna-r.1 for 106395828	bna-r.1 for 106450774	cit-r.1 for RRMP1	sly-u.5 for 101251325	sly-u.5 for 101258799	sly-u.5 for 101259595	sot-r.1 for 102580113	sot-r.1 for 102593822	sot-r.1 for 102581134	nta-r.1 for 107831253	nta-r.1 for 107804749	nta-r.1 for 107802337	osa-u.5 for 4336550	zma-u.5 for 109943278	zma-u.5 for 541976	zma-u.5 for 100216781	tae-r.2 for 123189952	tae-r.2 for 123054073	tae-r.2 for 123046192	hvu-r.1 for 123427396	sbi-r.1 for 110436555	bdi-r.1 for 100827844

Ortholog

Ortholog ID: 5092

Species

gma

mtr

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

RRMP1

Function^*

nucleolin

RNA-binding motif protein, Y chromosome, family 1 member B

nucleolin

uncharacterized LOC7483804

uncharacterized LOC18105096

RNA-binding (RRM/RBD/RNP motifs) family protein

RNA binding motif protein, X-linked-like-1

uncharacterized LOC100266805

heterogeneous nuclear ribonucleoprotein Q

nucleolin

nucleolin-like

RNA-binding motif protein, X chromosome

RNA recognition motif protein 1

uncharacterized LOC101251325

heterogeneous nuclear ribonucleoprotein Q

heterogeneous nuclear ribonucleoprotein Q-like

nucleolin-like

heterogeneous nuclear ribonucleoprotein R-like

nucleolin-like

uncharacterized LOC107831253

uncharacterized LOC107804749

uncharacterized LOC107770526

uncharacterized LOC4336550

heterogeneous nuclear ribonucleoprotein Q

RNA recognition water-stress protein 1

uncharacterized LOC100216781

nucleolin

uncharacterized LOC100827844

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	4
mtr00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	7
ppo03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	6
ath03013	Nucleocytoplasmic transport	2
ath03015	mRNA surveillance pathway	2
ath03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04144	Endocytosis	2
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	5
zma03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03250	Viral life cycle - HIV-1	3
tae03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03250	Viral life cycle - HIV-1	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03015	mRNA surveillance pathway	2
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	2
sbi03015	mRNA surveillance pathway	2
sbi03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	6

Expression

Expression pattern

Entrez Gene ID^*

100811387

100779340

100808583

25500115

11433736

7483804

18105096

819079

103866825

100266805

100232913

107911856

107911855

107923377

106395828

106450774

102578014

101251325

101258799

101259595

102580113

102593822

102581134

107831253

107804749

107770526

4336550

109943278

541976

100216781

123189952

123054073

123046192

123427396

110436555

100827844

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 100811387 (gma-u.5 coexpression data)

Top 50 enrichment test to 100811387 (gma-u.5 coexpression data)


Species	gma	mtr	ppo	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	5	2	2	1	1	2	3	2	1	3	3	3	1	3	3	1	1	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100811387 (gma-u.5 coexpression data)

Top 50 enrichment test to 100811387 (gma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**