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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100811938   chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic 
 gma-r.7   100811938   chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic 
 mtr-u.5   11427155   chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic 
 ppo-u.5   112325673   chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic 
 ath-u.5   CRS1   maize chloroplast splicing factor-like protein 
 bra-r.6   103851031   chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic 
 vvi-u.5   100256677   chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic 
 ghi-r.1   107916688   chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic 
 ghi-r.1   107912738   chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic 
 bna-r.1   106446230   chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like 
 bna-r.1   106354465   chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like 
 cit-r.1   102630061   chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic 
 sly-u.5   101254358   chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic 
 sot-r.1   102587090   chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic 
 nta-r.1   107795767   chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like 
 nta-r.1   107762063   chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic 
 osa-u.5   4345375   chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like 
 zma-u.5   541870   chloroplast RNA splicing 1 
 tae-r.2   123161031   chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic 
 tae-r.2   123167205   chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic 
 tae-r.2   123149835   chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic 
 hvu-r.1   123410824   chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like 
 sbi-r.1   8069883   chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic 
 bdi-r.1   100828512   chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic 

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Top 50 coexpressed genes to 100811938 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100811938 (gma-u.5 coexpression data)

CoexMap"100811938"


gmaLOC100811938 | Entrez gene ID : 100811938      
Species gma mtr ppo ath bra vvi ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 1 1 1 1 1 2 2 1 1 1 2 1 1 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000375 [list] [network] RNA splicing, via transesterification reactions  (299 genes)  IEA  
GO CC
GO MF
GO:0003729 [list] [network] mRNA binding  (563 genes)  IEA  
Protein XP_006603055.1 [sequence] [blastp]
XP_006603056.1 [sequence] [blastp]
XP_006603057.1 [sequence] [blastp]
XP_006603058.1 [sequence] [blastp]
XP_014626419.1 [sequence] [blastp]
XP_040868161.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 7,  chlo 2  (predict for XP_006603055.1)
cyto 7,  chlo 2  (predict for XP_006603056.1)
cyto 7,  chlo 2  (predict for XP_006603057.1)
cyto 7,  chlo 3  (predict for XP_006603058.1)
cyto 7,  chlo 2  (predict for XP_014626419.1)
cyto 7,  chlo 3  (predict for XP_040868161.1)
Subcellular
localization
TargetP
chlo 8  (predict for XP_006603055.1)
chlo 8  (predict for XP_006603056.1)
chlo 8  (predict for XP_006603057.1)
chlo 8  (predict for XP_006603058.1)
chlo 8  (predict for XP_014626419.1)
chlo 8  (predict for XP_040868161.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100811938
gma-r.7
for
100811938
mtr-u.5
for
11427155
ppo-u.5
for
112325673
ath-u.5
for
CRS1
bra-r.6
for
103851031
vvi-u.5
for
100256677
ghi-r.1
for
107916688
ghi-r.1
for
107912738
bna-r.1
for
106446230
bna-r.1
for
106354465
cit-r.1
for
102630061
sly-u.5
for
101254358
sot-r.1
for
102587090
nta-r.1
for
107795767
nta-r.1
for
107762063
osa-u.5
for
4345375
zma-u.5
for
541870
tae-r.2
for
123161031
tae-r.2
for
123167205
tae-r.2
for
123149835
hvu-r.1
for
123410824
sbi-r.1
for
8069883
bdi-r.1
for
100828512


Ortholog ID: 11409
Species gma mtr ppo ath bra vvi ghi ghi bna bna cit sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol LOC100811938 LOC11427155 LOC112325673 CRS1 LOC103851031 LOC100256677 LOC107916688 LOC107912738 LOC106446230 LOC106354465 LOC102630061 LOC101254358 LOC102587090 LOC107795767 LOC107762063 LOC4345375 LOC541870 LOC123161031 LOC123167205 LOC123149835 LOC123410824 LOC8069883 LOC100828512
Function* chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic maize chloroplast splicing factor-like protein chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like chloroplast RNA splicing 1 chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 3
cit00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 2
nta03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100811938 11427155 112325673 831476 103851031 100256677 107916688 107912738 106446230 106354465 102630061 101254358 102587090 107795767 107762063 4345375 541870 123161031 123167205 123149835 123410824 8069883 100828512
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